Variant report

Variant	rs72941528
Chromosome Location	chr11:36581632-36581633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836578	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836586	0.86[EUR][1000 genomes]
rs10836587	0.86[EUR][1000 genomes]
rs10836589	0.86[EUR][1000 genomes]
rs11033757	1.00[ASN][1000 genomes]
rs1391544	0.86[EUR][1000 genomes]
rs1391545	0.81[EUR][1000 genomes]
rs1518741	0.84[EUR][1000 genomes]
rs1969325	0.84[EUR][1000 genomes]
rs2047444	0.86[EUR][1000 genomes]
rs332435	0.86[EUR][1000 genomes]
rs332440	0.86[EUR][1000 genomes]
rs332442	0.86[EUR][1000 genomes]
rs34312910	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34314271	0.86[EUR][1000 genomes]
rs60420187	0.84[EUR][1000 genomes]
rs7123148	1.00[ASN][1000 genomes]
rs72941597	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36579600-36582400	Flanking Active TSS	Dnd41	blood
2	chr11:36580400-36586000	Weak transcription	Liver	Liver
3	chr11:36581000-36582400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr11:36581400-36582000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr11:36581600-36582400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr11:36581600-36582400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:36581600-36582400	Enhancers	Fetal Thymus	thymus
8	chr11:36581600-36586200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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