Variant report

Variant	rs343151
Chromosome Location	chr2:20595958-20595959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20595575..20596468-chr2:20835032..20836255,3	MCF-7	breast:
2	chr2:20592640..20602218-chr2:20644635..20652468,15	MCF-7	breast:
3	chr2:20591374..20593036-chr2:20595761..20597892,2	K562	blood:
4	chr2:20593621..20596225-chr2:20647006..20648525,2	K562	blood:
5	chr2:20595499..20596405-chr2:20841941..20842882,3	K562	blood:
6	chr2:20550164..20552284-chr2:20593869..20596397,2	MCF-7	breast:
7	chr2:20595462..20596242-chr2:20835415..20836238,2	MCF-7	breast:
8	chr2:20594854..20598775-chr2:20849778..20852579,3	MCF-7	breast:
9	chr2:20594707..20597635-chr2:20644222..20647598,4	MCF-7	breast:
10	chr2:20595506..20596331-chr2:20843738..20844339,2	MCF-7	breast:
11	chr2:20595552..20596431-chr2:20835296..20835858,4	K562	blood:
12	chr2:20595234..20597261-chr2:20850505..20852505,2	MCF-7	breast:
13	chr2:20545031..20546726-chr2:20595623..20597239,2	MCF-7	breast:
14	chr2:20595167..20596377-chr2:20841669..20842665,4	MCF-7	breast:
15	chr2:20594752..20597920-chr2:20599422..20601687,4	MCF-7	breast:
16	chr2:20593415..20596009-chr2:20611195..20613787,2	MCF-7	breast:
17	chr2:20595575..20596417-chr2:20622317..20623312,3	MCF-7	breast:
18	chr2:20594606..20597852-chr2:20647913..20650943,6	MCF-7	breast:
19	chr2:20595535..20596459-chr2:20850436..20851422,4	K562	blood:

No data

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Variant related genes	Relation type
ENSG00000212171	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000118960	Chromatin interaction
ENSG00000228950	Chromatin interaction
ENSG00000055917	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1032075	0.83[CHB][hapmap]
rs11901184	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs343140	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs343142	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs343143	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs343144	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs343152	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs343154	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6531236	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7563890	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs953927	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
2	chr2:20592600-20596000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:20592600-20600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:20594000-20596400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:20595600-20596200	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:20595600-20596400	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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