Variant report

Variant	rs343154
Chromosome Location	chr2:20592935-20592936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000055917	Chromatin interaction
ENSG00000252216	Chromatin interaction
ENSG00000232800	Chromatin interaction
ENSG00000228950	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000118960	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1032075	0.88[CHB][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11901184	0.82[JPT][hapmap]
rs343140	0.86[JPT][hapmap]
rs343142	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs343143	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs343144	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs343151	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs343152	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6531236	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7563890	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
2	chr2:20585800-20593800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:20590800-20595600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:20591000-20593600	Weak transcription	Fetal Brain Male	brain
5	chr2:20592200-20593200	Bivalent Enhancer	HepG2	liver
6	chr2:20592600-20594000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:20592600-20596000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:20592600-20600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:20592800-20594000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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