Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11723050	0.82[CHB][hapmap]
rs13149200	0.82[CHB][hapmap]
rs1376102	0.82[CHB][hapmap]
rs1450473	0.82[CHB][hapmap];0.85[CHD][hapmap];0.83[TSI][hapmap]
rs1450475	0.81[CHB][hapmap]
rs1470696	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1588521	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs184669	0.82[CHB][hapmap]
rs1901135	0.92[ASN][1000 genomes]
rs2053875	0.87[CHB][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2167207	0.82[CHB][hapmap]
rs2892917	0.88[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs3099888	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs3106314	0.93[ASN][1000 genomes]
rs3115313	0.94[ASN][1000 genomes]
rs343178	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[TSI][hapmap]
rs343180	0.82[CHB][hapmap]
rs343194	0.96[ASN][1000 genomes]
rs343202	0.81[CHB][hapmap];0.85[CHD][hapmap];0.81[TSI][hapmap]
rs343203	0.82[CHB][hapmap]
rs343205	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs343212	0.82[CHB][hapmap]
rs3804178	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7675777	0.87[CHB][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs870252	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:121791400-121803200	Weak transcription	Fetal Stomach	stomach
3	chr4:121792400-121800000	Weak transcription	Aorta	Aorta
4	chr4:121795200-121797400	Enhancers	Fetal Lung	lung
5	chr4:121795800-121797400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:121796000-121797400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:121796000-121797400	Enhancers	Ovary	ovary
8	chr4:121796200-121797400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:121796400-121797200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:121796400-121824400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:121796600-121797200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:121796600-121798000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:121796600-121802000	Weak transcription	NHDF-Ad	bronchial
14	chr4:121796600-121803200	Weak transcription	Pancreas	Pancrea
15	chr4:121796800-121803200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:121796800-121808400	Weak transcription	Left Ventricle	heart
17	chr4:121797000-121798200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:121797000-121798400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:121797000-121823800	Weak transcription	Osteobl	bone

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