Variant report

Variant	rs7675777
Chromosome Location	chr4:121789730-121789731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11723050	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs11737173	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13149200	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs1376102	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1470696	0.82[CHB][hapmap]
rs1588521	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs2053875	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2892917	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap]
rs3099888	0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs343201	0.87[CHB][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs34623744	0.90[ASN][1000 genomes]
rs34640899	0.89[ASN][1000 genomes]
rs35177247	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3804178	0.83[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121766200-121790800	Weak transcription	Ovary	ovary
2	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
3	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:121784600-121791200	Weak transcription	Pancreas	Pancrea
6	chr4:121787200-121791200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:121787400-121791200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:121787600-121790400	Weak transcription	Fetal Lung	lung
9	chr4:121787600-121791400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:121787600-121796000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:121788000-121790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:121788000-121790800	Weak transcription	NHDF-Ad	bronchial
13	chr4:121788000-121791000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:121788000-121791000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:121788200-121790600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:121788400-121791400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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