Variant report

Variant	rs34327448
Chromosome Location	chr17:50261956-50261957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10048179	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10048182	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10514998	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11079994	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11079995	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12450602	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12451253	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12600466	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12600737	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12601661	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12601960	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12935859	0.81[ASN][1000 genomes]
rs12936283	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12936458	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12936870	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12937096	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12937717	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12939544	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12942120	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12942881	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12949235	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12950144	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12950394	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17609957	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17615989	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17677532	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17678475	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2036483	0.84[ASN][1000 genomes]
rs34409294	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34410780	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34602793	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34626694	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34826545	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34863683	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34887893	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35054095	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35094159	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35217539	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35359524	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35757374	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35824492	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72836090	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8076676	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8076994	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9903845	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50260200-50264800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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