Variant report

Variant	rs9903845
Chromosome Location	chr17:50291181-50291182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10048179	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10048182	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10514998	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11079994	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11079995	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12450602	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12451253	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12600466	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12600737	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12601661	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12601960	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12935859	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12936283	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12936458	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12936870	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12937096	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12937717	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12939544	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12942120	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12942881	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12949235	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12950144	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12950394	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503046	0.84[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap]
rs17609957	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17615989	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17677532	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17678475	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2970049	0.84[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap]
rs2970052	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs34327448	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34409294	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34410780	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34602793	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34626694	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34826545	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34863683	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34887893	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35054095	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35094159	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35217539	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35359524	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35757374	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35824492	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72836090	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8076676	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8076994	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1064193	chr17:50270352-50320667	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1064285	chr17:50290372-50507829	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv543385	chr17:50290372-50507829	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9903845	NME1	cis	parietal	SCAN
rs9903845	PHB	cis	parietal	SCAN
rs9903845	ZNF652	cis	cerebellum	SCAN
rs9903845	CACNA1G	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50289000-50291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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