Variant report

Variant	rs34337666
Chromosome Location	chr3:155596922-155596923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10804773	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10804774	0.87[ASN][1000 genomes]
rs10936020	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714133	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13059611	0.80[ASN][1000 genomes]
rs13091683	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13096499	0.85[EUR][1000 genomes]
rs2054878	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2063903	0.88[ASN][1000 genomes]
rs35321137	0.89[ASN][1000 genomes]
rs35472369	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3772115	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3772116	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3821365	0.89[ASN][1000 genomes]
rs4680219	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680223	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441028	0.89[ASN][1000 genomes]
rs66509404	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6763830	0.85[EUR][1000 genomes]
rs6799267	0.86[ASN][1000 genomes]
rs7619976	0.89[ASN][1000 genomes]
rs7633168	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643630	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7651038	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7652005	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155589600-155599600	Weak transcription	Spleen	Spleen
2	chr3:155589800-155607000	Weak transcription	Pancreas	Pancrea
3	chr3:155590000-155599400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:155590200-155599000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:155590200-155599400	Weak transcription	Right Ventricle	heart
6	chr3:155590200-155608400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:155590600-155597800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:155590800-155607200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:155591000-155598000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:155591000-155598200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:155591000-155599000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:155591000-155599200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:155591000-155599400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:155591000-155599400	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:155591000-155599800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:155591000-155607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:155591000-155611200	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:155591000-155611800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:155591200-155607800	Weak transcription	Fetal Intestine Small	intestine
22	chr3:155591200-155612600	Weak transcription	Primary B cells from cord blood	blood
23	chr3:155591400-155602200	Weak transcription	Fetal Lung	lung
24	chr3:155591400-155606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:155591400-155611200	Weak transcription	Fetal Thymus	thymus
26	chr3:155591400-155616200	Weak transcription	NHEK	skin
27	chr3:155592000-155611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:155592200-155607000	Weak transcription	NHDF-Ad	bronchial
29	chr3:155592200-155607200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:155592600-155599400	Weak transcription	A549	lung
31	chr3:155592600-155608400	Weak transcription	Hela-S3	cervix
32	chr3:155593200-155599400	Weak transcription	Ovary	ovary
33	chr3:155593200-155607000	Weak transcription	Aorta	Aorta
34	chr3:155593200-155607000	Weak transcription	Psoas Muscle	Psoas
35	chr3:155593400-155607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:155593400-155607000	Weak transcription	Gastric	stomach
37	chr3:155594000-155597400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:155594200-155597000	Enhancers	HepG2	liver
39	chr3:155594200-155599400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:155594200-155599400	Weak transcription	Right Atrium	heart
41	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:155594400-155597000	Enhancers	Dnd41	blood
43	chr3:155594400-155597600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:155594400-155598000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:155594400-155598000	Weak transcription	Fetal Heart	heart
46	chr3:155594400-155599600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:155594400-155607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:155594400-155607800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:155594600-155606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:155594800-155599600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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