Variant report

Variant	rs3821365
Chromosome Location	chr3:155636795-155636796
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155635669..155638094-chr3:155654896..155656922,2	K562	blood:
2	chr3:155634121..155636961-chr3:155639455..155641625,2	K562	blood:
3	chr3:155610858..155613058-chr3:155634768..155637699,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10804773	0.97[ASN][1000 genomes]
rs10804774	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10936020	0.99[ASN][1000 genomes]
rs1131925	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714133	0.98[ASN][1000 genomes]
rs13059611	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13091683	0.88[ASN][1000 genomes]
rs2054878	0.87[ASN][1000 genomes]
rs2063903	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34337666	0.89[ASN][1000 genomes]
rs35321137	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35472369	0.87[ASN][1000 genomes]
rs3772115	0.96[ASN][1000 genomes]
rs3772116	0.97[ASN][1000 genomes]
rs4680219	0.99[ASN][1000 genomes]
rs4680223	0.93[ASN][1000 genomes]
rs6441028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66509404	0.97[ASN][1000 genomes]
rs6763830	0.85[ASN][1000 genomes]
rs6799267	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7619976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7633168	0.98[ASN][1000 genomes]
rs7643630	0.86[ASN][1000 genomes]
rs7651038	0.94[ASN][1000 genomes]
rs7652005	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3821365	SLC33A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
4	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:155607200-155656800	Weak transcription	Small Intestine	intestine
6	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
7	chr3:155608600-155646400	Strong transcription	Dnd41	blood
8	chr3:155608800-155654800	Weak transcription	Aorta	Aorta
9	chr3:155609200-155657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:155609600-155652000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:155610800-155638200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:155610800-155646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:155610800-155646200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:155611000-155646200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:155611000-155646200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:155611200-155646200	Strong transcription	Fetal Thymus	thymus
17	chr3:155612400-155648600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155612800-155646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155621800-155641800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:155623000-155646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:155623800-155637800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:155624400-155646200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr3:155626200-155646200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:155626400-155645800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:155626800-155646200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr3:155627000-155646200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:155627400-155644200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:155628200-155638200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:155628200-155643200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:155628600-155636800	Strong transcription	Placenta	Placenta
31	chr3:155628600-155638200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:155628800-155643000	Weak transcription	NHLF	lung
33	chr3:155631000-155651600	Weak transcription	Fetal Heart	heart
34	chr3:155631600-155644200	Strong transcription	Osteobl	bone
35	chr3:155631800-155638400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:155632000-155637800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:155632000-155638000	Strong transcription	Liver	Liver
38	chr3:155632000-155644200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr3:155632200-155637400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:155632200-155637600	Strong transcription	HSMM	muscle
41	chr3:155632200-155638000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:155632200-155640800	Strong transcription	A549	lung
43	chr3:155632200-155643600	Strong transcription	Hela-S3	cervix
44	chr3:155632200-155645600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:155632200-155646200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:155632600-155638200	Strong transcription	Primary B cells from cord blood	blood
47	chr3:155632600-155644200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr3:155633200-155642400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:155633600-155638800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:155633800-155638600	Strong transcription	NHDF-Ad	bronchial

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