Variant report

Variant	rs34341037
Chromosome Location	chr15:82315102-82315103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12902481	1.00[ASN][1000 genomes]
rs17354185	1.00[ASN][1000 genomes]
rs28876157	1.00[ASN][1000 genomes]
rs34088129	1.00[ASN][1000 genomes]
rs34922061	1.00[ASN][1000 genomes]
rs4778665	1.00[ASN][1000 genomes]
rs62011975	1.00[ASN][1000 genomes]
rs62012003	1.00[ASN][1000 genomes]
rs62012004	1.00[ASN][1000 genomes]
rs62012005	1.00[ASN][1000 genomes]
rs62012010	1.00[ASN][1000 genomes]
rs62012011	1.00[ASN][1000 genomes]
rs62012043	1.00[ASN][1000 genomes]
rs62012046	1.00[ASN][1000 genomes]
rs62012047	1.00[ASN][1000 genomes]
rs62012049	1.00[ASN][1000 genomes]
rs67548148	1.00[ASN][1000 genomes]
rs67824562	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82310000-82315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:82310600-82315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:82311200-82315200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:82313200-82315200	Enhancers	HMEC	breast
6	chr15:82313400-82315200	Enhancers	Placenta	Placenta
7	chr15:82315000-82316000	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links