Variant report

Variant	rs34346108
Chromosome Location	chr8:67450178-67450179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11985608	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11995298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12547831	0.97[ASN][1000 genomes]
rs16932954	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34949628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62512590	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62512592	0.95[ASN][1000 genomes]
rs62512594	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62512597	1.00[ASN][1000 genomes]
rs62512598	1.00[ASN][1000 genomes]
rs6982757	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997318	0.99[ASN][1000 genomes]
rs6998821	1.00[ASN][1000 genomes]
rs7008801	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7011235	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73259750	0.99[ASN][1000 genomes]
rs7823762	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7832611	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7839827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67437800-67454000	Weak transcription	Psoas Muscle	Psoas
2	chr8:67439800-67454400	Weak transcription	Right Atrium	heart
3	chr8:67443600-67450200	Enhancers	Placenta	Placenta
4	chr8:67444200-67454000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:67446200-67454000	Weak transcription	Pancreas	Pancrea
6	chr8:67446200-67454000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:67446600-67453400	Weak transcription	Fetal Brain Female	brain
8	chr8:67447200-67453800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:67447200-67454000	Weak transcription	Left Ventricle	heart
10	chr8:67447600-67453800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:67447800-67452000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:67447800-67452000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:67447800-67454400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:67448000-67452000	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:67448200-67450200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:67448200-67452200	Weak transcription	Fetal Heart	heart
17	chr8:67448200-67452800	Weak transcription	Brain Angular Gyrus	brain
18	chr8:67448200-67453600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:67448200-67453800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr8:67448400-67450800	Weak transcription	Thymus	Thymus
21	chr8:67448400-67453600	Weak transcription	Liver	Liver
22	chr8:67448400-67454400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr8:67448600-67454000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr8:67448600-67454000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:67448800-67452000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:67448800-67452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:67448800-67452000	Weak transcription	Dnd41	blood
28	chr8:67448800-67452600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:67448800-67453600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr8:67448800-67453800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:67448800-67453800	Weak transcription	Brain Anterior Caudate	brain
32	chr8:67448800-67454000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:67448800-67454000	Weak transcription	Esophagus	oesophagus
34	chr8:67448800-67454000	Weak transcription	Spleen	Spleen
35	chr8:67448800-67454200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:67449000-67450400	Weak transcription	Primary T cells from cord blood	blood
37	chr8:67449000-67450400	Weak transcription	Fetal Thymus	thymus
38	chr8:67449000-67451000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:67449000-67452000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:67449000-67452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:67449000-67452600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:67449000-67453000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:67449000-67453600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:67449000-67453600	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:67449000-67453600	Weak transcription	Brain Substantia Nigra	brain
46	chr8:67449000-67453600	Weak transcription	Right Ventricle	heart
47	chr8:67449000-67454000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr8:67449200-67450200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr8:67449200-67451000	Weak transcription	GM12878-XiMat	blood
50	chr8:67449200-67454600	Weak transcription	Aorta	Aorta

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