Variant report

Variant	rs7839827
Chromosome Location	chr8:67443141-67443142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67442224..67445363-chr8:67520078..67522956,3	MCF-7	breast:
2	chr8:67401678..67404150-chr8:67442018..67444245,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11985608	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11995298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547831	0.98[ASN][1000 genomes]
rs16932954	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34346108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34949628	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62512590	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62512592	0.97[ASN][1000 genomes]
rs62512594	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62512597	0.99[ASN][1000 genomes]
rs62512598	0.99[ASN][1000 genomes]
rs6982757	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997318	1.00[ASN][1000 genomes]
rs6998821	0.99[ASN][1000 genomes]
rs7008801	0.99[ASN][1000 genomes]
rs7011235	1.00[ASN][1000 genomes]
rs73259750	1.00[ASN][1000 genomes]
rs7823762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832611	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67435400-67445000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:67435600-67446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:67435600-67448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:67436000-67443800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:67436000-67446800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:67436000-67448000	Weak transcription	Spleen	Spleen
7	chr8:67436400-67444400	Weak transcription	Primary T cells from cord blood	blood
8	chr8:67436600-67443600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:67436600-67443600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:67437800-67443800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:67437800-67454000	Weak transcription	Psoas Muscle	Psoas
12	chr8:67438200-67443800	Weak transcription	Fetal Heart	heart
13	chr8:67439000-67444600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:67439200-67443400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:67439400-67443600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:67439400-67443600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:67439400-67445000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:67439800-67443200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:67439800-67443400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:67439800-67443400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:67439800-67443600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:67439800-67443800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr8:67439800-67444200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr8:67439800-67445000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr8:67439800-67454400	Weak transcription	Right Atrium	heart
26	chr8:67440400-67443600	Weak transcription	Placenta	Placenta
27	chr8:67440400-67443800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:67440600-67443600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:67440600-67443600	Weak transcription	HSMM	muscle
30	chr8:67440600-67445000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr8:67440800-67443800	Weak transcription	Aorta	Aorta
32	chr8:67440800-67445000	Weak transcription	Hela-S3	cervix
33	chr8:67441000-67443400	Weak transcription	Osteobl	bone
34	chr8:67441000-67443600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:67441000-67443600	Weak transcription	HMEC	breast
36	chr8:67441000-67443600	Weak transcription	NHDF-Ad	bronchial
37	chr8:67441000-67445000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:67441000-67445200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr8:67441200-67443200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr8:67441200-67443600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:67441200-67443600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:67441200-67443800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:67441400-67443600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:67441400-67445200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:67442600-67443200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr8:67443000-67449600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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