Variant report

Variant	rs34365518
Chromosome Location	chr6:106713435-106713436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11936423	0.82[ASN][1000 genomes]
rs11936946	0.82[ASN][1000 genomes]
rs11938021	0.83[ASN][1000 genomes]
rs17182898	0.82[ASN][1000 genomes]
rs2189186	0.81[ASN][1000 genomes]
rs2214384	0.82[ASN][1000 genomes]
rs2214387	0.94[ASN][1000 genomes]
rs35223253	0.92[ASN][1000 genomes]
rs4302434	0.82[ASN][1000 genomes]
rs4635787	0.82[ASN][1000 genomes]
rs55871997	0.82[ASN][1000 genomes]
rs56091462	0.81[ASN][1000 genomes]
rs59017289	0.82[ASN][1000 genomes]
rs61117447	0.82[ASN][1000 genomes]
rs62312188	0.82[ASN][1000 genomes]
rs62312189	0.82[ASN][1000 genomes]
rs62312245	0.82[ASN][1000 genomes]
rs67816799	0.83[ASN][1000 genomes]
rs6842062	0.82[ASN][1000 genomes]
rs7688333	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1019265	chr6:106587627-106727591	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv538402	chr6:106587627-106727591	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
12	nsv1025963	chr6:106593639-106848778	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv970664	chr6:106635267-106887670	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1030367	chr6:106667748-106802072	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv538403	chr6:106667748-106802072	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106671600-106724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:106676400-106739200	Weak transcription	Small Intestine	intestine
3	chr6:106683400-106716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:106684000-106720200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:106689800-106734000	Weak transcription	Esophagus	oesophagus
6	chr6:106695800-106740800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:106696000-106717000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:106696000-106721400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:106696000-106722600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:106696000-106724800	Weak transcription	Placenta	Placenta
11	chr6:106696000-106725600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:106696200-106716600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:106696200-106725400	Weak transcription	Dnd41	blood
14	chr6:106696200-106726000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:106696600-106725200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:106698200-106720000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:106699200-106767400	Weak transcription	Stomach Mucosa	stomach
18	chr6:106702000-106722600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:106705600-106719000	Weak transcription	K562	blood
20	chr6:106706200-106739600	Weak transcription	Hela-S3	cervix
21	chr6:106709000-106739000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:106709600-106719200	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:106709600-106723600	Weak transcription	NHLF	lung
24	chr6:106709600-106723800	Weak transcription	NHDF-Ad	bronchial
25	chr6:106709800-106713600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:106709800-106739200	Weak transcription	HSMMtube	muscle
27	chr6:106710000-106716600	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:106710200-106713600	Weak transcription	Adipose Nuclei	Adipose
29	chr6:106710200-106725000	Weak transcription	NHEK	skin
30	chr6:106710400-106721800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:106710400-106738800	Weak transcription	HepG2	liver
32	chr6:106710600-106726000	Weak transcription	Liver	Liver
33	chr6:106710600-106729000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:106710800-106725400	Weak transcription	Left Ventricle	heart
35	chr6:106710800-106725800	Weak transcription	Lung	lung
36	chr6:106711000-106726600	Weak transcription	A549	lung
37	chr6:106711200-106725800	Weak transcription	Ovary	ovary
38	chr6:106711400-106716600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:106711400-106717200	Weak transcription	Colonic Mucosa	Colon
40	chr6:106711400-106718800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:106711400-106720200	Weak transcription	Aorta	Aorta
42	chr6:106711600-106713800	Weak transcription	Spleen	Spleen
43	chr6:106711600-106716600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:106711600-106716600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:106711600-106716600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:106711600-106716600	Weak transcription	Fetal Intestine Small	intestine
47	chr6:106711600-106716800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:106711600-106719200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:106711600-106724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:106711600-106725000	Weak transcription	Primary T cells from cord blood	blood

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