The 2.0 version of rSNPBase

Variant report

Variant rs34372607
Chromosome Location chr20:16290078-16290079
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16247600-16290800 Weak transcription Primary T helper naive cells fromperipheralblood blood
2 chr20:16248600-16291400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr20:16254000-16290800 Weak transcription Esophagus oesophagus
4 chr20:16254000-16298400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr20:16262600-16346200 Weak transcription Gastric stomach
6 chr20:16264800-16290800 Weak transcription Lung lung
7 chr20:16270800-16302400 Weak transcription Brain Hippocampus Middle brain
8 chr20:16276400-16348200 Weak transcription Colon Smooth Muscle Colon
9 chr20:16283400-16295800 Weak transcription Fetal Lung lung
10 chr20:16284400-16290800 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr20:16284400-16313600 Weak transcription Primary hematopoietic stem cells blood
12 chr20:16284600-16294400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr20:16284600-16298200 Weak transcription Primary B cells from cord blood blood
14 chr20:16284600-16313600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr20:16284800-16290800 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr20:16284800-16302400 Weak transcription Brain Substantia Nigra brain
17 chr20:16284800-16302800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr20:16285000-16290800 Weak transcription Left Ventricle heart
19 chr20:16285000-16295000 Weak transcription Primary B cells from peripheral blood blood
20 chr20:16285200-16294200 Weak transcription Brain Anterior Caudate brain
21 chr20:16285400-16330000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr20:16285800-16291400 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr20:16286000-16298200 Weak transcription Ovary ovary
24 chr20:16286600-16294200 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr20:16287000-16291600 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr20:16287000-16294200 Weak transcription HepG2 liver
27 chr20:16287000-16315200 Weak transcription Primary T cells fromperipheralblood blood
28 chr20:16287600-16290800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr20:16288000-16332400 Weak transcription Brain Cingulate Gyrus brain
30 chr20:16288400-16318200 Weak transcription Pancreas Pancrea
31 chr20:16288600-16297800 Weak transcription Fetal Intestine Small intestine
32 chr20:16288800-16290800 Weak transcription Stomach Smooth Muscle stomach
33 chr20:16288800-16293200 Strong transcription Rectal Mucosa Donor 31 rectum
34 chr20:16288800-16296200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr20:16288800-16313800 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr20:16288800-16318600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr20:16289200-16290200 Enhancers Fetal Muscle Leg muscle
38 chr20:16289200-16296200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr20:16289200-16297200 Weak transcription Fetal Intestine Large intestine
40 chr20:16289200-16313800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr20:16289400-16297000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr20:16289400-16297200 Weak transcription Monocytes-CD14+_RO01746 blood
43 chr20:16289400-16298400 Weak transcription Psoas Muscle Psoas
44 chr20:16289400-16348000 Weak transcription Colonic Mucosa Colon
45 chr20:16289800-16290800 Weak transcription Aorta Aorta
46 chr20:16289800-16290800 Weak transcription Duodenum Mucosa Duodenum
47 chr20:16289800-16292800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr20:16289800-16296000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr20:16289800-16297400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr20:16289800-16297800 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015