Variant report

Variant	rs35458737
Chromosome Location	chr20:16270001-16270002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13038209	0.92[EUR][1000 genomes]
rs13039876	0.85[EUR][1000 genomes]
rs13040354	0.88[EUR][1000 genomes]
rs13040454	0.88[EUR][1000 genomes]
rs13040489	0.85[EUR][1000 genomes]
rs13041027	0.81[EUR][1000 genomes]
rs13042199	1.00[EUR][1000 genomes]
rs13042286	0.88[EUR][1000 genomes]
rs13043684	0.92[EUR][1000 genomes]
rs13044167	0.88[EUR][1000 genomes]
rs34009116	0.85[EUR][1000 genomes]
rs34271129	0.85[EUR][1000 genomes]
rs34372607	0.92[EUR][1000 genomes]
rs34543355	0.92[EUR][1000 genomes]
rs34776633	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34822784	0.88[EUR][1000 genomes]
rs34914952	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990368	0.92[EUR][1000 genomes]
rs35123649	0.92[EUR][1000 genomes]
rs35155900	0.85[EUR][1000 genomes]
rs35193759	0.92[EUR][1000 genomes]
rs35281214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35291129	0.92[EUR][1000 genomes]
rs35583105	0.92[EUR][1000 genomes]
rs35933731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043852	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043863	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043870	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075050	0.85[EUR][1000 genomes]
rs6111016	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs66481149	0.88[EUR][1000 genomes]
rs66752755	0.85[EUR][1000 genomes]
rs66839904	0.88[EUR][1000 genomes]
rs67182398	0.88[EUR][1000 genomes]
rs67199324	0.85[EUR][1000 genomes]
rs73112319	0.88[EUR][1000 genomes]
rs8126093	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv523556	chr20:16266622-16271850	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3396554	chr20:16267052-16271450	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16242400-16275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16247600-16290800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr20:16248600-16291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:16248800-16272600	Weak transcription	Primary T cells from cord blood	blood
5	chr20:16249000-16272800	Weak transcription	Right Ventricle	heart
6	chr20:16249200-16277400	Weak transcription	Brain Substantia Nigra	brain
7	chr20:16252000-16270800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:16252000-16289400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr20:16252400-16283000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr20:16253000-16277800	Weak transcription	Brain Angular Gyrus	brain
11	chr20:16254000-16278800	Weak transcription	Adipose Nuclei	Adipose
12	chr20:16254000-16281400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr20:16254000-16290800	Weak transcription	Esophagus	oesophagus
14	chr20:16254000-16298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:16254200-16278600	Weak transcription	Pancreas	Pancrea
16	chr20:16254200-16284200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr20:16255400-16283000	Weak transcription	Fetal Lung	lung
18	chr20:16261400-16272800	Weak transcription	Osteobl	bone
19	chr20:16261600-16270800	Weak transcription	HepG2	liver
20	chr20:16262600-16285400	Weak transcription	Ovary	ovary
21	chr20:16262600-16346200	Weak transcription	Gastric	stomach
22	chr20:16263600-16273200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr20:16263600-16277200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr20:16264400-16281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr20:16264600-16284000	Weak transcription	Aorta	Aorta
26	chr20:16264800-16290800	Weak transcription	Lung	lung
27	chr20:16265000-16283800	Weak transcription	Primary B cells from cord blood	blood
28	chr20:16265000-16289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr20:16265200-16273200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr20:16265200-16281200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr20:16265200-16282600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr20:16265600-16270200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr20:16265600-16280600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr20:16265600-16281400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr20:16265600-16281600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr20:16265600-16282000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr20:16265600-16282000	Weak transcription	Fetal Intestine Small	intestine
38	chr20:16265600-16282800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr20:16265600-16284200	Weak transcription	Left Ventricle	heart
40	chr20:16265800-16282200	Weak transcription	Psoas Muscle	Psoas
41	chr20:16265800-16289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr20:16268000-16271000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr20:16268800-16277400	Weak transcription	Fetal Muscle Leg	muscle
44	chr20:16269800-16271800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr20:16270000-16270600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr20:16270000-16270600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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