Variant report

Variant	rs34374711
Chromosome Location	chr5:54038868-54038869
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:54037843..54041857-chr5:54043536..54048349,6	K562	blood:
2	chr5:53569316..53571436-chr5:54037174..54039171,2	K562	blood:
3	chr5:54014462..54016849-chr5:54037550..54040142,2	K562	blood:
4	chr5:53996151..53998533-chr5:54037504..54039404,2	K562	blood:
5	chr5:54037843..54039936-chr5:54044579..54046953,2	K562	blood:
6	chr5:54037020..54040567-chr5:54043537..54047094,3	MCF-7	breast:
7	chr5:53841259..53841985-chr5:54038209..54039072,2	MCF-7	breast:
8	chr5:54037732..54040168-chr5:54049770..54052180,2	MCF-7	breast:
9	chr5:53812995..53814543-chr5:54037974..54039139,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1445841	1.00[ASN][1000 genomes]
rs16883415	0.87[AFR][1000 genomes]
rs34249542	1.00[ASN][1000 genomes]
rs35879229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452522	1.00[ASN][1000 genomes]
rs4492076	1.00[ASN][1000 genomes]
rs4591701	1.00[ASN][1000 genomes]
rs6880283	1.00[ASN][1000 genomes]
rs71622148	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54034200-54039000	Enhancers	NHDF-Ad	bronchial
2	chr5:54034200-54039600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:54034200-54040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:54034400-54039400	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:54034400-54039800	Weak transcription	Esophagus	oesophagus
6	chr5:54034400-54039800	Weak transcription	Fetal Stomach	stomach
7	chr5:54034400-54039800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:54034600-54039200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:54034600-54039600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:54034600-54039800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:54034600-54041400	Weak transcription	Lung	lung
12	chr5:54034800-54039400	Weak transcription	Primary T cells from cord blood	blood
13	chr5:54036200-54039600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:54036400-54039600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr5:54036400-54039600	Weak transcription	Spleen	Spleen
16	chr5:54036400-54041600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:54036400-54042000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:54036800-54041800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:54036800-54044800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:54037200-54039000	Weak transcription	Dnd41	blood
21	chr5:54037200-54042800	Weak transcription	Gastric	stomach
22	chr5:54037400-54041000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:54037400-54041200	Enhancers	NHEK	skin
24	chr5:54037600-54039800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:54037600-54039800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr5:54037600-54040600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:54037600-54040600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:54037600-54040800	Enhancers	HMEC	breast
29	chr5:54037600-54040800	Enhancers	Osteobl	bone
30	chr5:54037600-54041200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:54037600-54041200	Enhancers	NH-A	brain
32	chr5:54037600-54041400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:54037600-54042000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr5:54037800-54040800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr5:54037800-54041600	Enhancers	NHLF	lung
36	chr5:54038000-54040600	Enhancers	Placenta	Placenta
37	chr5:54038200-54039000	Enhancers	Fetal Muscle Leg	muscle
38	chr5:54038200-54039200	Enhancers	Liver	Liver
39	chr5:54038200-54039400	Enhancers	HSMMtube	muscle
40	chr5:54038200-54039800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:54038200-54040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr5:54038200-54040000	Enhancers	Small Intestine	intestine
43	chr5:54038200-54040600	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr5:54038200-54040600	Enhancers	Stomach Mucosa	stomach
45	chr5:54038200-54040800	Enhancers	Adipose Nuclei	Adipose
46	chr5:54038200-54040800	Enhancers	HUVEC	blood vessel
47	chr5:54038200-54041200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:54038200-54041400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr5:54038200-54041600	Enhancers	HSMM	muscle
50	chr5:54038200-54041800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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