Variant report

Variant	rs35879229
Chromosome Location	chr5:54040073-54040074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:54037843..54041857-chr5:54043536..54048349,6	K562	blood:
2	chr5:54014462..54016849-chr5:54037550..54040142,2	K562	blood:
3	chr5:54037020..54040567-chr5:54043537..54047094,3	MCF-7	breast:
4	chr5:54037732..54040168-chr5:54049770..54052180,2	MCF-7	breast:
5	chr5:54039960..54041992-chr5:54042143..54044677,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-45H22.3.1-1	chr5:54039687-54040086	NR_104658

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1445841	1.00[ASN][1000 genomes]
rs34249542	1.00[ASN][1000 genomes]
rs34374711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452522	1.00[ASN][1000 genomes]
rs4492076	1.00[ASN][1000 genomes]
rs4591701	1.00[ASN][1000 genomes]
rs6880283	1.00[ASN][1000 genomes]
rs71622148	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54034600-54041400	Weak transcription	Lung	lung
2	chr5:54036400-54041600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:54036400-54042000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:54036800-54041800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:54036800-54044800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:54037200-54042800	Weak transcription	Gastric	stomach
7	chr5:54037400-54041000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:54037400-54041200	Enhancers	NHEK	skin
9	chr5:54037600-54040600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:54037600-54040600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:54037600-54040800	Enhancers	HMEC	breast
12	chr5:54037600-54040800	Enhancers	Osteobl	bone
13	chr5:54037600-54041200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:54037600-54041200	Enhancers	NH-A	brain
15	chr5:54037600-54041400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:54037600-54042000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr5:54037800-54040800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:54037800-54041600	Enhancers	NHLF	lung
19	chr5:54038000-54040600	Enhancers	Placenta	Placenta
20	chr5:54038200-54040600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr5:54038200-54040600	Enhancers	Stomach Mucosa	stomach
22	chr5:54038200-54040800	Enhancers	Adipose Nuclei	Adipose
23	chr5:54038200-54040800	Enhancers	HUVEC	blood vessel
24	chr5:54038200-54041200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:54038200-54041400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr5:54038200-54041600	Enhancers	HSMM	muscle
27	chr5:54038200-54041800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:54038200-54041800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr5:54038200-54041800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:54038200-54041800	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr5:54038200-54041800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:54038200-54041800	Enhancers	Fetal Heart	heart
33	chr5:54038200-54042000	Enhancers	Primary T cells fromperipheralblood	blood
34	chr5:54038200-54042600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:54038400-54040200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:54038400-54040600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr5:54038400-54040800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr5:54038400-54041600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr5:54038400-54041800	Enhancers	Fetal Lung	lung
40	chr5:54038400-54042800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:54038600-54040600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr5:54038600-54040600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:54038600-54041600	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr5:54038600-54041600	Weak transcription	Left Ventricle	heart
45	chr5:54038600-54041800	Enhancers	Duodenum Mucosa	Duodenum
46	chr5:54038800-54040400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr5:54038800-54040600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:54038800-54040600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr5:54038800-54040600	Enhancers	Colon Smooth Muscle	Colon
50	chr5:54038800-54041200	Enhancers	Hela-S3	cervix

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