Variant report

Variant	rs34378451
Chromosome Location	chr15:49568564-49568565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12900719	1.00[AMR][1000 genomes]
rs34051297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34053724	1.00[AMR][1000 genomes]
rs71467669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3370928	chr15:49567360-49571558	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
8	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix
13	chr15:49551000-49574200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:49551000-49575400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:49554800-49575400	Weak transcription	Fetal Lung	lung
16	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:49557800-49569600	Weak transcription	Fetal Intestine Small	intestine
18	chr15:49557800-49575800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:49557800-49575800	Weak transcription	Fetal Stomach	stomach
20	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:49558000-49575800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
23	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
24	chr15:49558400-49575800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:49558600-49569000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr15:49558600-49574000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:49558600-49575400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:49558800-49574000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:49558800-49575200	Weak transcription	Fetal Intestine Large	intestine
30	chr15:49559000-49574600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:49559200-49581400	Weak transcription	Spleen	Spleen
32	chr15:49559600-49573800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:49559800-49574200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:49559800-49575200	Weak transcription	Primary B cells from cord blood	blood
35	chr15:49560000-49574000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr15:49560400-49568600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr15:49561000-49600800	Weak transcription	Pancreas	Pancrea
38	chr15:49561200-49575200	Weak transcription	Thymus	Thymus
39	chr15:49561600-49577800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:49562000-49595800	Weak transcription	HepG2	liver
41	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:49562800-49571200	Weak transcription	Placenta	Placenta
43	chr15:49563000-49576000	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:49563400-49572400	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:49563400-49574200	Weak transcription	Fetal Thymus	thymus
46	chr15:49563400-49574200	Weak transcription	Dnd41	blood
47	chr15:49563600-49575200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:49563600-49575400	Weak transcription	Aorta	Aorta
49	chr15:49563600-49611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:49563800-49583200	Weak transcription	H1 Cell Line	embryonic stem cell

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