Variant report

Variant	rs71467669
Chromosome Location	chr15:49542259-49542260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49541585..49543251-chr15:49545018..49547358,2	K562	blood:
2	chr15:49538461..49540714-chr15:49541925..49544059,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12900719	1.00[AMR][1000 genomes]
rs34051297	1.00[AMR][1000 genomes]
rs34053724	1.00[AMR][1000 genomes]
rs34378451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv569343	chr15:49531192-49547790	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv569344	chr15:49534702-49546105	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv569345	chr15:49534702-49546939	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv569346	chr15:49534702-49547790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv569347	chr15:49534702-49549943	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv569348	chr15:49540216-49546424	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv569349	chr15:49540216-49546574	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv569350	chr15:49540216-49546683	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv569351	chr15:49540216-49547146	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv569352	chr15:49540216-49547735	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv569353	chr15:49540216-49547790	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv569354	chr15:49540216-49549943	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
2	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
3	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
4	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
5	chr15:49524600-49544800	Weak transcription	Lung	lung
6	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:49528400-49547800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:49529200-49550600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:49529400-49544200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:49529400-49545600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:49531000-49542800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:49532000-49545000	Weak transcription	Fetal Thymus	thymus
13	chr15:49532200-49542600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:49532800-49545400	Weak transcription	HUVEC	blood vessel
15	chr15:49533400-49548200	Weak transcription	HMEC	breast
16	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:49535600-49557000	Weak transcription	Fetal Intestine Small	intestine
18	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:49535800-49545000	Weak transcription	Thymus	Thymus
22	chr15:49535800-49545600	Weak transcription	Fetal Intestine Large	intestine
23	chr15:49535800-49549200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:49535800-49563400	Weak transcription	NH-A	brain
25	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
26	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:49536000-49546800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:49536200-49547600	Weak transcription	Hela-S3	cervix
29	chr15:49536200-49549400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:49536200-49549800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:49536200-49553200	Weak transcription	Primary B cells from cord blood	blood
32	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:49537800-49549000	Weak transcription	Liver	Liver
34	chr15:49538600-49550400	Weak transcription	HSMM	muscle
35	chr15:49539400-49553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:49539600-49543800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:49539600-49544400	Weak transcription	Placenta	Placenta
38	chr15:49539600-49563000	Weak transcription	Ovary	ovary
39	chr15:49540000-49550400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:49540000-49550400	Weak transcription	NHDF-Ad	bronchial
41	chr15:49540000-49552200	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:49540000-49566200	Weak transcription	K562	blood
43	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
44	chr15:49540200-49545600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:49540200-49552200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:49540600-49543200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:49540600-49557400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:49540800-49543000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:49540800-49548400	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:49541000-49542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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