Variant report

Variant	rs34394320
Chromosome Location	chr3:156879122-156879123
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:64)
CpG islands
(count:61)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:64 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156876714-156879143	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr3:156875169-156879293	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr3:156876034-156879187	GM12892	blood:	n/a	n/a
4	STAT3	chr3:156877802-156879280	Hela-S3	cervix:	n/a	n/a
5	TBP	chr3:156877008-156879123	H1-hESC	embryonic stem cell:	n/a	chr3:156878569-156878580
6	MTA3	chr3:156876897-156879216	GM12878	blood:	n/a	n/a
7	GATA2	chr3:156878422-156879137	HUVEC	blood vessel:	n/a	chr3:156878771-156878781 chr3:156878865-156878875
8	POLR2A	chr3:156876253-156879191	HepG2	liver:	n/a	n/a
9	POLR2A	chr3:156876812-156879195	GM12892	blood:	n/a	n/a
10	POLR2A	chr3:156875365-156879216	IMR90	lung:	n/a	n/a
11	POLR2A	chr3:156875302-156879130	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr3:156874371-156879129	GM12891	blood:	n/a	n/a
13	POLR2A	chr3:156873921-156879347	MCF10A-Er-Src	breast:	n/a	n/a
14	GTF2F1	chr3:156877745-156879136	Hela-S3	cervix:	n/a	chr3:156878569-156878580
15	POLR2A	chr3:156874146-156879345	GM12878	blood:	n/a	n/a
16	RELA	chr3:156877067-156879276	GM18951	blood:	n/a	n/a
17	JUN	chr3:156877416-156879209	K562	blood:	n/a	chr3:156878014-156878023 chr3:156878630-156878642 chr3:156878013-156878026
18	MTA3	chr3:156877535-156879134	GM12878	blood:	n/a	n/a
19	RELA	chr3:156877675-156879128	GM18505	blood:	n/a	n/a
20	RELA	chr3:156876991-156879191	GM12891	blood:	n/a	n/a
21	TEAD4	chr3:156877486-156879171	K562	blood:	n/a	n/a
22	BRCA1	chr3:156877774-156879253	Hela-S3	cervix:	n/a	n/a
23	SIN3AK20	chr3:156876741-156879214	MCF-7	breast:	n/a	n/a
24	RELA	chr3:156877144-156879190	GM12892	blood:	n/a	n/a
25	POLR2A	chr3:156875549-156879255	GM12878	blood:	n/a	n/a
26	POLR2A	chr3:156875723-156879141	GM18505	blood:	n/a	n/a
27	POLR2A	chr3:156876516-156879141	GM12891	blood:	n/a	n/a
28	POLR2A	chr3:156861007-156879269	K562	blood:	n/a	n/a
29	HCFC1	chr3:156873857-156879327	Hela-S3	cervix:	n/a	n/a
30	MAX	chr3:156876873-156879147	MCF-7	breast:	n/a	chr3:156877996-156878005
31	PML	chr3:156876866-156879165	GM12878	blood:	n/a	chr3:156878145-156878153
32	ARID3A	chr3:156877615-156879163	HepG2	liver:	n/a	n/a
33	POLR2A	chr3:156873300-156879147	GM12878	blood:	n/a	n/a
34	FOXM1	chr3:156876864-156879208	GM12878	blood:	n/a	n/a
35	MAZ	chr3:156876876-156879373	IMR90	lung:	n/a	chr3:156877996-156878005
36	POLR2A	chr3:156877562-156879192	ECC-1	luminal epithelium:	n/a	n/a
37	RELA	chr3:156877760-156879139	GM18526	blood:	n/a	n/a
38	POLR2A	chr3:156877508-156879195	SK-N-SH	brain:	n/a	n/a
39	RFX5	chr3:156877732-156879170	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr3:156876989-156879135	K562	blood:	n/a	n/a
41	POLR2A	chr3:156876901-156879156	K562	blood:	n/a	n/a
42	BCLAF1	chr3:156876858-156879155	GM12878	blood:	n/a	chr3:156877322-156877331 chr3:156877372-156877385 chr3:156878028-156878041 chr3:156877366-156877379 chr3:156877366-156877375 chr3:156877316-156877329 chr3:156877369-156877378 chr3:156877367-156877380 chr3:156878027-156878040 chr3:156877363-156877376 chr3:156877372-156877381 chr3:156877360-156877373
43	POLR2A	chr3:156876864-156879184	HUVEC	blood vessel:	n/a	n/a
44	ESRRA	chr3:156876535-156879192	GM12878	blood:	n/a	n/a
45	POLR2A	chr3:156876559-156879129	PBDE	blood:	n/a	n/a
46	POLR2A	chr3:156875088-156879191	Hela-S3	cervix:	n/a	n/a
47	MAX	chr3:156876831-156879164	HepG2	liver:	n/a	chr3:156877996-156878005
48	CREB1	chr3:156876857-156879144	HepG2	liver:	n/a	chr3:156878012-156878025
49	POLR2A	chr3:156876269-156879240	K562	blood:	n/a	n/a
50	POLR2A	chr3:156876810-156879155	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:156879083-156879133	Hela-S3	cervix:	n/a
2	chr3:156879083-156879133	HRE	kidney:	n/a
3	chr3:156879083-156879133	SAEC	small airway:	n/a
4	chr3:156879083-156879133	HRCEpiC	kidney:	n/a
5	chr3:156879083-156879133	HUVEC	blood vessel:	n/a
6	chr3:156879083-156879133	ProgFib	skin:	n/a
7	chr3:156879083-156879133	HEK293	kidney:	embryo
8	chr3:156879083-156879133	HRPEpiC	eye:	n/a
9	chr3:156879083-156879133	IMR90	lung:	fetal
10	chr3:156879083-156879133	Hepatocyte	liver:	n/a
11	chr3:156879083-156879133	HIPEpiC	eye:	n/a
12	chr3:156879083-156879133	PANC-1	pancreas:	n/a
13	chr3:156879083-156879133	HL-60	blood:	n/a
14	chr3:156879083-156879133	T-47D	breast:	n/a
15	chr3:156879083-156879133	AG04449	skin:	fetal
16	chr3:156879083-156879133	GM19239	blood:	n/a
17	chr3:156879083-156879133	AG09319	gingival:	n/a
18	chr3:156879083-156879133	HPAEpiC	pulmonary alveolar:	n/a
19	chr3:156879083-156879133	LNCaP	prostate:	n/a
20	chr3:156879083-156879133	PFSK-1	brain:	n/a
21	chr3:156879083-156879133	A549	lung:	n/a
22	chr3:156879083-156879133	SK-N-MC	brain:	n/a
23	chr3:156879083-156879133	NHDF-neo	bronchial:	n/a
24	chr3:156879083-156879133	NT2-D1	testis:	n/a
25	chr3:156879083-156879133	GM12878	blood:	n/a
26	chr3:156879083-156879133	AG09309	skin:	n/a
27	chr3:156879083-156879133	ovcar-3	ovarian:	n/a
28	chr3:156879083-156879133	RPTEC	kidney:	n/a
29	chr3:156879083-156879133	MCF10A-Er-Src	breast:	n/a
30	chr3:156879083-156879133	SK-N-SH	brain:	n/a
31	chr3:156879083-156879133	GM06990	blood:	n/a
32	chr3:156879083-156879133	HMEC	breast:	n/a
33	chr3:156879083-156879133	GM12891	blood:	n/a
34	chr3:156879083-156879133	PrEC	prostate:	n/a
35	chr3:156879083-156879133	HepG2	liver:	n/a
36	chr3:156879083-156879133	K562	blood:	n/a
37	chr3:156879083-156879133	Caco-2	colon:	n/a
38	chr3:156879083-156879133	AG04450	lung:	fetal
39	chr3:156879083-156879133	HCPEpiC	choroid plexus:	n/a
40	chr3:156879083-156879133	CMK	blood:	n/a
41	chr3:156879083-156879133	U87	brain:	n/a
42	chr3:156879083-156879133	SK-N-SH_RA	brain:	n/a
43	chr3:156879083-156879133	HCF	heart:	n/a
44	chr3:156879083-156879133	NHBE	bronchial:	n/a
45	chr3:156879083-156879133	Jurkat	blood:	n/a
46	chr3:156879083-156879133	ECC-1	luminal epithelium:	n/a
47	chr3:156879083-156879133	HCT-116	colon:	n/a
48	chr3:156879083-156879133	HEEpiC	esophagus:	n/a
49	chr3:156879083-156879133	MCF-7	breast:	n/a
50	chr3:156879083-156879133	NH-A	brain:	n/a

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156799577..156801238-chr3:156877640..156879746,2	K562	blood:
2	chr3:156270417..156272669-chr3:156876892..156879496,3	MCF-7	breast:
3	chr3:156574840..156576820-chr3:156878938..156880728,2	K562	blood:
4	chr3:156390967..156393612-chr3:156877452..156879722,5	K562	blood:
5	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
6	chr17:61850669..61851474-chr3:156878244..156879352,3	Hela-S3	cervix:
7	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
8	chr3:156542707..156546513-chr3:156875626..156880471,4	K562	blood:
9	chr1:235530311..235530993-chr3:156878689..156879352,2	Hela-S3	cervix:
10	chr3:156390449..156395705-chr3:156876136..156879645,10	MCF-7	breast:
11	chr3:156877990..156879497-chr6:26155874..26158713,2	MCF-7	breast:
12	chr3:156876658..156879378-chr3:156891661..156893506,34	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000241770	TF binding region
CCNL1	TF binding region
ENSG00000241770	CpG island
CCNL1	CpG island
ENSG00000116957	Chromatin interaction
ENSG00000108588	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000114850	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000198231	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv965226	chr3:156878848-156881756	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156871800-156879200	Active TSS	Right Ventricle	heart
2	chr3:156872400-156879200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156876600-156879200	Active TSS	Fetal Muscle Trunk	muscle
4	chr3:156876800-156879200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr3:156877000-156879200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr3:156877000-156879400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:156877000-156879600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr3:156877200-156879200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:156877800-156879200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156878000-156879200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:156878000-156879200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:156878200-156879200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr3:156878200-156879200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr3:156878200-156879200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:156878200-156879200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr3:156878200-156879200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr3:156878200-156879200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:156878200-156879200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156878200-156879200	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr3:156878200-156879200	Flanking Active TSS	Placenta	Placenta
21	chr3:156878200-156879200	Flanking Active TSS	HUVEC	blood vessel
22	chr3:156878200-156879200	Flanking Active TSS	NH-A	brain
23	chr3:156878200-156879400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:156878200-156879400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:156878400-156879200	Active TSS	Right Atrium	heart
26	chr3:156878600-156879200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr3:156878600-156879200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr3:156878600-156879200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr3:156878600-156879200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr3:156878600-156879200	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr3:156878600-156879200	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr3:156878600-156879200	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr3:156878600-156879200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr3:156878600-156879200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr3:156878600-156879200	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr3:156878600-156879200	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr3:156878600-156879200	Flanking Active TSS	Fetal Muscle Leg	muscle
38	chr3:156878600-156879200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr3:156878600-156879200	Flanking Active TSS	Dnd41	blood
40	chr3:156878600-156879200	Flanking Active TSS	HSMM	muscle
41	chr3:156878600-156879400	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr3:156878600-156879400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr3:156878600-156879400	Flanking Active TSS	GM12878-XiMat	blood
44	chr3:156878600-156879400	Flanking Active TSS	NHEK	skin
45	chr3:156878600-156880600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:156878600-156881600	Weak transcription	Lung	lung
47	chr3:156878600-156882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:156878600-156882000	Weak transcription	Gastric	stomach
49	chr3:156878800-156879200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:156878800-156879200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links