Variant report

Variant	nsv965226
Chromosome Location	chr3:156878848-156881756
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:412)
CpG islands
(count:184)
Chromatin interactive
region (count:26)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:412 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:156877615-156879163	HepG2	liver:	n/a	n/a
2	ATF1	chr3:156877745-156878897	K562	blood:	n/a	n/a
3	ATF2	chr3:156877537-156879010	GM12878	blood:	n/a	chr3:156878013-156878024
4	ATF2	chr3:156877592-156879059	GM12878	blood:	n/a	chr3:156878013-156878024
5	BATF	chr3:156878399-156878860	GM12878	blood:	n/a	n/a
6	BCL3	chr3:156878390-156878884	GM12878	blood:	n/a	n/a
7	BCL3	chr3:156877589-156878911	A549	lung:	n/a	chr3:156878028-156878041 chr3:156878027-156878040
8	BCLAF1	chr3:156877594-156878903	GM12878	blood:	n/a	chr3:156878028-156878041 chr3:156878027-156878040
9	BCLAF1	chr3:156876858-156879155	GM12878	blood:	n/a	chr3:156877322-156877331 chr3:156877372-156877385 chr3:156878028-156878041 chr3:156877366-156877379 chr3:156877366-156877375 chr3:156877316-156877329 chr3:156877369-156877378 chr3:156877367-156877380 chr3:156878027-156878040 chr3:156877363-156877376 chr3:156877372-156877381 chr3:156877360-156877373
10	BHLHE40	chr3:156877348-156879103	K562	blood:	n/a	chr3:156877367-156877383 chr3:156877369-156877385
11	BHLHE40	chr3:156877481-156878978	HepG2	liver:	n/a	n/a
12	BHLHE40	chr3:156877754-156879003	GM12878	blood:	n/a	n/a
13	BRCA1	chr3:156877770-156878928	H1-hESC	embryonic stem cell:	n/a	n/a
14	BRCA1	chr3:156877774-156879253	Hela-S3	cervix:	n/a	n/a
15	CBX3	chr3:156877629-156878943	K562	blood:	n/a	n/a
16	CEBPB	chr3:156878315-156878868	A549	lung:	n/a	n/a
17	CEBPB	chr3:156877663-156878969	A549	lung:	n/a	n/a
18	CEBPB	chr3:156877769-156878978	K562	blood:	n/a	n/a
19	CEBPB	chr3:156877737-156878856	ECC-1	luminal epithelium:	n/a	n/a
20	CEBPB	chr3:156877773-156878970	MCF-7	breast:	n/a	n/a
21	CEBPB	chr3:156877139-156878959	HCT-116	colon:	n/a	n/a
22	CEBPB	chr3:156877748-156878862	IMR90	lung:	n/a	n/a
23	CEBPB	chr3:156877725-156879011	GM12878	blood:	n/a	n/a
24	CEBPB	chr3:156877835-156879060	K562	blood:	n/a	n/a
25	CEBPB	chr3:156876980-156879184	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr3:156877560-156878871	MCF-7	breast:	n/a	n/a
27	CEBPD	chr3:156877622-156879077	K562	blood:	n/a	n/a
28	CHD1	chr3:156876272-156878893	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD1	chr3:156868741-156879284	IMR90	lung:	n/a	n/a
30	CHD1	chr3:156876847-156879103	GM12878	blood:	n/a	n/a
31	CHD2	chr3:156877014-156878995	GM12878	blood:	n/a	n/a
32	CHD2	chr3:156876993-156879037	Hela-S3	cervix:	n/a	n/a
33	CREB1	chr3:156876860-156878902	GM12878	blood:	n/a	chr3:156878012-156878025
34	CREB1	chr3:156876857-156879144	HepG2	liver:	n/a	chr3:156878012-156878025
35	CTCF	chr3:156880500-156880650	K562	blood:	n/a	n/a
36	CTCF	chr3:156880447-156880670	HepG2	liver:	n/a	n/a
37	CTCF	chr3:156880487-156880692	GM10266	blood:	n/a	n/a
38	CTCF	chr3:156880380-156880530	A549	lung:	n/a	n/a
39	CTCF	chr3:156880380-156880530	HEEpiC	esophagus:	n/a	n/a
40	CTCF	chr3:156880540-156880690	SAEC	small airway:	n/a	n/a
41	CTCF	chr3:156880480-156880630	HL-60	blood:	n/a	n/a
42	CTCF	chr3:156877859-156878883	K562	blood:	n/a	n/a
43	CTCF	chr3:156880516-156880654	HepG2	liver:	n/a	n/a
44	CTCF	chr3:156880500-156880688	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr3:156880500-156880650	GM12875	blood:	n/a	n/a
46	CTCF	chr3:156880532-156880646	GM13976	blood:	n/a	n/a
47	CTCF	chr3:156880380-156880530	GM12872	blood:	n/a	n/a
48	CTCF	chr3:156880580-156880730	GM12872	blood:	n/a	n/a
49	CTCF	chr3:156880480-156880630	GM06990	blood:	n/a	n/a
50	CTCF	chr3:156880479-156880728	MCF-7	breast:	n/a	n/a

(count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:156879058-156879108	HNPCEpiC	eye:	n/a
2	chr3:156879058-156879108	HNPCEpiC	eye:	n/a
3	chr3:156879058-156879108	NT2-D1	testis:	n/a
4	chr3:156879058-156879108	AG10803	skin:	n/a
5	chr3:156879083-156879133	NT2-D1	testis:	n/a
6	chr3:156879058-156879108	SK-N-SH_RA	brain:	n/a
7	chr3:156879083-156879133	MCF10A-Er-Src	breast:	n/a
8	chr3:156881681-156881731	SAEC	small airway:	n/a
9	chr3:156881681-156881731	NB4	blood:	n/a
10	chr3:156879083-156879133	AoSMC	blood vessel:	n/a
11	chr3:156881681-156881731	AG10803	skin:	n/a
12	chr3:156881681-156881731	HEK293	kidney:	embryo
13	chr3:156879083-156879133	Jurkat	blood:	n/a
14	chr3:156879083-156879133	ovcar-3	ovarian:	n/a
15	chr3:156879058-156879108	GM06990	blood:	n/a
16	chr3:156879058-156879108	HEEpiC	esophagus:	n/a
17	chr3:156879058-156879108	PFSK-1	brain:	n/a
18	chr3:156879058-156879108	MCF-7	breast:	n/a
19	chr3:156879083-156879133	HUVEC	blood vessel:	n/a
20	chr3:156881681-156881731	GM19239	blood:	n/a
21	chr3:156879058-156879108	ovcar-3	ovarian:	n/a
22	chr3:156879083-156879133	AG09309	skin:	n/a
23	chr3:156879058-156879108	NHBE	bronchial:	n/a
24	chr3:156879083-156879133	PrEC	prostate:	n/a
25	chr3:156881681-156881731	AoSMC	blood vessel:	n/a
26	chr3:156881681-156881731	BJ	skin:	n/a
27	chr3:156879058-156879108	AG04450	lung:	fetal
28	chr3:156879058-156879108	AG09319	gingival:	n/a
29	chr3:156879083-156879133	HEK293	kidney:	embryo
30	chr3:156881681-156881731	HRPEpiC	eye:	n/a
31	chr3:156879083-156879133	HAEpiC	amniotic membrane:	n/a
32	chr3:156879058-156879108	GM12892	blood:	n/a
33	chr3:156881681-156881731	HepG2	liver:	n/a
34	chr3:156879083-156879133	ProgFib	skin:	n/a
35	chr3:156879083-156879133	NHDF-neo	bronchial:	n/a
36	chr3:156879058-156879108	NB4	blood:	n/a
37	chr3:156881681-156881731	HCF	heart:	n/a
38	chr3:156879083-156879133	HRPEpiC	eye:	n/a
39	chr3:156881681-156881731	Jurkat	blood:	n/a
40	chr3:156879058-156879108	BE2_C	brain:	n/a
41	chr3:156881681-156881731	AG04450	lung:	fetal
42	chr3:156881681-156881731	Hepatocyte	liver:	n/a
43	chr3:156881681-156881731	HRE	kidney:	n/a
44	chr3:156879058-156879108	ProgFib	skin:	n/a
45	chr3:156879058-156879108	RPTEC	kidney:	n/a
46	chr3:156879083-156879133	HPAEpiC	pulmonary alveolar:	n/a
47	chr3:156879058-156879108	U87	brain:	n/a
48	chr3:156881681-156881731	ECC-1	luminal epithelium:	n/a
49	chr3:156879058-156879108	Caco-2	colon:	n/a
50	chr3:156879058-156879108	NHDF-neo	bronchial:	n/a

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156799577..156801238-chr3:156877640..156879746,2	K562	blood:
2	chr3:156390449..156395705-chr3:156876136..156879645,10	MCF-7	breast:
3	chr3:156270417..156272669-chr3:156876892..156879496,3	MCF-7	breast:
4	chr11:65266062..65267005-chr3:156878215..156879104,2	Hela-S3	cervix:
5	chr3:156880119..156881023-chr3:156919270..156920148,2	MCF-7	breast:
6	chr3:156880369..156881165-chr3:156919127..156919741,3	K562	blood:
7	chr3:156876658..156879378-chr3:156891661..156893506,34	Hela-S3	cervix:
8	chr14:50329175..50329695-chr3:156878004..156878896,2	Hela-S3	cervix:
9	chr1:222886029..222886690-chr3:156878406..156878911,2	Hela-S3	cervix:
10	chr3:156878407..156879008-chr7:102715174..102716014,2	Hela-S3	cervix:
11	chr3:156533151..156536166-chr3:156876536..156878958,4	MCF-7	breast:
12	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
13	chr12:49658449..49659329-chr3:156878118..156878938,3	Hela-S3	cervix:
14	chr3:156877990..156879497-chr6:26155874..26158713,2	MCF-7	breast:
15	chr3:156574840..156576820-chr3:156878938..156880728,2	K562	blood:
16	chr1:235530311..235530993-chr3:156878689..156879352,2	Hela-S3	cervix:
17	chr2:131594435..131595031-chr3:156878104..156879008,2	Hela-S3	cervix:
18	chr12:52445120..52446136-chr3:156877833..156878965,3	Hela-S3	cervix:
19	chr3:156390967..156393612-chr3:156877452..156879722,5	K562	blood:
20	chr3:156542707..156546513-chr3:156875626..156880471,4	K562	blood:
21	chr17:61850669..61851474-chr3:156878244..156879352,3	Hela-S3	cervix:
22	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
23	chr1:169454840..169455424-chr3:156878085..156879028,2	Hela-S3	cervix:
24	chr15:41624471..41625190-chr3:156878541..156879113,2	Hela-S3	cervix:
25	chr1:245027282..245027917-chr3:156878222..156878967,2	Hela-S3	cervix:
26	chr19:47615631..47616867-chr3:156877843..156878906,3	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LEKR1-3	chr3:156881241-156881443	ENSG00000241770.1

No data

Variant related genes	Relation type
KRT18P34	TF binding region
ENSG00000241770	TF binding region
CCNL1	TF binding region
KRT18P34	CpG island
ENSG00000241770	CpG island
CCNL1	CpG island
ENSG00000167553	chromatin interactions
ENSG00000161040	chromatin interactions
ENSG00000243926	chromatin interactions
ENSG00000142230	chromatin interactions
ENSG00000170632	chromatin interactions
ENSG00000104147	chromatin interactions
ENSG00000198231	chromatin interactions
ENSG00000123358	chromatin interactions
ENSG00000265150	chromatin interactions
ENSG00000213062	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000153187	chromatin interactions
ENSG00000241544	chromatin interactions
ENSG00000114850	chromatin interactions
ENSG00000251562	chromatin interactions
ENSG00000136002	chromatin interactions
ENSG00000163659	chromatin interactions
ENSG00000117479	chromatin interactions
ENSG00000197980	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000222675	chromatin interactions
ENSG00000137804	chromatin interactions
ENSG00000243176	chromatin interactions
ENSG00000108588	chromatin interactions
ENSG00000116957	chromatin interactions
ENSG00000258101	chromatin interactions
ENSG00000233221	chromatin interactions
ENSG00000186063	chromatin interactions
ENSG00000240875	chromatin interactions

Extended variants
information (count: 125 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:125 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369289599	chr3:156878854-156878855	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	31 gene(s)	Overlapped CNVs	n/a
2	rs539262131	chr3:156878892-156878893	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	31 gene(s)	Overlapped CNVs	n/a
3	rs182432075	chr3:156878909-156878910	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
4	rs187872875	chr3:156878911-156878912	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
5	rs535831212	chr3:156878924-156878925	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
6	rs562402446	chr3:156878937-156878938	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
7	rs144713053	chr3:156878938-156878939	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
8	rs145904461	chr3:156878963-156878964	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	26 gene(s)	Overlapped CNVs	n/a
9	rs542819062	chr3:156879001-156879002	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
10	rs190882344	chr3:156879019-156879020	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
11	rs575705860	chr3:156879028-156879029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
12	rs4371471	chr3:156879097-156879098	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs564696644	chr3:156879118-156879119	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
14	rs5003893	chr3:156879120-156879121	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs34394320	chr3:156879122-156879123	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
16	rs541264864	chr3:156879240-156879241	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
17	rs142714965	chr3:156879265-156879266	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
18	rs530036484	chr3:156879348-156879349	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
19	rs549362593	chr3:156879377-156879378	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
20	rs561287529	chr3:156879401-156879402	Weak transcription Enhancers Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs183455472	chr3:156879407-156879408	Weak transcription Enhancers Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
22	rs188557224	chr3:156879455-156879456	Weak transcription Enhancers Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
23	rs11925249	chr3:156879483-156879484	Weak transcription Enhancers Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
24	rs62274154	chr3:156879525-156879526	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs571760291	chr3:156879530-156879531	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs538836557	chr3:156879551-156879552	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs548006966	chr3:156879556-156879557	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs192963517	chr3:156879557-156879558	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs536572989	chr3:156879594-156879595	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs554100095	chr3:156879599-156879600	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs569317681	chr3:156879657-156879658	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs565249675	chr3:156879660-156879661	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs574825454	chr3:156879672-156879673	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs576896645	chr3:156879687-156879688	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs540851953	chr3:156879698-156879699	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs74613213	chr3:156879805-156879806	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs542148245	chr3:156879824-156879825	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs563616002	chr3:156879830-156879831	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs531735877	chr3:156879837-156879838	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs374433836	chr3:156879838-156879839	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs184827005	chr3:156879955-156879956	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs150479458	chr3:156879971-156879972	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs547650863	chr3:156879996-156879997	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs542192057	chr3:156880015-156880016	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs559106132	chr3:156880024-156880025	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs188144599	chr3:156880059-156880060	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs138334890	chr3:156880060-156880061	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs149606618	chr3:156880131-156880132	Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs548461627	chr3:156880220-156880221	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs570059254	chr3:156880236-156880237	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Cancer	17440070	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21611746	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:267 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156871800-156879200	Active TSS	Right Ventricle	heart
2	chr3:156872200-156879000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
3	chr3:156872400-156879200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156874800-156879000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:156875000-156879000	Active TSS	Psoas Muscle	Psoas
6	chr3:156875800-156879000	Active TSS	Left Ventricle	heart
7	chr3:156876200-156879000	Active TSS	Small Intestine	intestine
8	chr3:156876400-156879000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:156876600-156879000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr3:156876600-156879000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:156876600-156879000	Active TSS	Fetal Brain Male	brain
12	chr3:156876600-156879200	Active TSS	Fetal Muscle Trunk	muscle
13	chr3:156876800-156879000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr3:156876800-156879200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr3:156877000-156879000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:156877000-156879000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr3:156877000-156879000	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr3:156877000-156879000	Active TSS	Liver	Liver
19	chr3:156877000-156879000	Active TSS	Esophagus	oesophagus
20	chr3:156877000-156879000	Active TSS	Pancreas	Pancrea
21	chr3:156877000-156879000	Active TSS	HSMMtube	muscle
22	chr3:156877000-156879200	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr3:156877000-156879400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr3:156877000-156879600	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr3:156877200-156879200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:156877800-156879200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:156878000-156879200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:156878000-156879200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:156878200-156879000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:156878200-156879000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:156878200-156879000	Active TSS	Aorta	Aorta
32	chr3:156878200-156879200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr3:156878200-156879200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr3:156878200-156879200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:156878200-156879200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr3:156878200-156879200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr3:156878200-156879200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:156878200-156879200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:156878200-156879200	Flanking Active TSS	Duodenum Mucosa	Duodenum
40	chr3:156878200-156879200	Flanking Active TSS	Placenta	Placenta
41	chr3:156878200-156879200	Flanking Active TSS	HUVEC	blood vessel
42	chr3:156878200-156879200	Flanking Active TSS	NH-A	brain
43	chr3:156878200-156879400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:156878200-156879400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:156878400-156879000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:156878400-156879200	Active TSS	Right Atrium	heart
47	chr3:156878600-156879000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:156878600-156879000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:156878600-156879000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr3:156878600-156879000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links