Variant report

Variant	rs531735877
Chromosome Location	chr3:156879837-156879838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156879797-156880544	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:156879708-156880136	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156574840..156576820-chr3:156878938..156880728,2	K562	blood:
2	chr3:156542707..156546513-chr3:156875626..156880471,4	K562	blood:

Variant related genes	Relation type
ENSG00000241770	TF binding region
CCNL1	TF binding region
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv965226	chr3:156878848-156881756	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156878600-156880600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:156878600-156881600	Weak transcription	Lung	lung
3	chr3:156878600-156882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156878600-156882000	Weak transcription	Gastric	stomach
5	chr3:156879000-156880600	Weak transcription	Pancreas	Pancrea
6	chr3:156879000-156881600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:156879000-156883200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:156879000-156885600	Weak transcription	Psoas Muscle	Psoas
9	chr3:156879000-156891800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:156879000-156892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:156879200-156880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:156879200-156880000	Enhancers	Placenta	Placenta
13	chr3:156879200-156880000	Enhancers	Hela-S3	cervix
14	chr3:156879200-156880200	Enhancers	Fetal Intestine Large	intestine
15	chr3:156879200-156880600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:156879200-156880800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:156879200-156881000	Enhancers	Liver	Liver
18	chr3:156879200-156881400	Weak transcription	Right Ventricle	heart
19	chr3:156879200-156881600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:156879200-156881600	Weak transcription	Colonic Mucosa	Colon
21	chr3:156879200-156881800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:156879200-156882200	Enhancers	HepG2	liver
23	chr3:156879200-156883000	Weak transcription	Right Atrium	heart
24	chr3:156879200-156884200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:156879200-156884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:156879200-156884400	Weak transcription	Fetal Kidney	kidney
27	chr3:156879200-156891800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:156879200-156891800	Weak transcription	Fetal Stomach	stomach
29	chr3:156879200-156891800	Weak transcription	Fetal Thymus	thymus
30	chr3:156879200-156892000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:156879400-156880000	Enhancers	GM12878-XiMat	blood
32	chr3:156879400-156880000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr3:156879400-156880200	Enhancers	Primary B cells from cord blood	blood
34	chr3:156879400-156880200	Enhancers	K562	blood
35	chr3:156879400-156880400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:156879400-156881000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:156879400-156881000	Weak transcription	HSMM	muscle
38	chr3:156879400-156881400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:156879400-156882000	Weak transcription	Osteobl	bone
40	chr3:156879400-156891200	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:156879600-156880800	Genic enhancers	Fetal Intestine Small	intestine
42	chr3:156879800-156880000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:156879800-156880200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:156879800-156880400	Weak transcription	Spleen	Spleen
45	chr3:156879800-156880800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:156879800-156880800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:156879800-156881200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:156879800-156881200	Enhancers	Small Intestine	intestine
49	chr3:156879800-156881400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:156879800-156884000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links