Variant report

Variant	rs540851953
Chromosome Location	chr3:156879698-156879699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156799577..156801238-chr3:156877640..156879746,2	K562	blood:
2	chr3:156574840..156576820-chr3:156878938..156880728,2	K562	blood:
3	chr3:156390967..156393612-chr3:156877452..156879722,5	K562	blood:
4	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
5	chr3:156542707..156546513-chr3:156875626..156880471,4	K562	blood:

Variant related genes	Relation type
ENSG00000241544	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv965226	chr3:156878848-156881756	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156878600-156880600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:156878600-156881600	Weak transcription	Lung	lung
3	chr3:156878600-156882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156878600-156882000	Weak transcription	Gastric	stomach
5	chr3:156879000-156879800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:156879000-156879800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:156879000-156879800	Weak transcription	Small Intestine	intestine
8	chr3:156879000-156880600	Weak transcription	Pancreas	Pancrea
9	chr3:156879000-156881600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:156879000-156883200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:156879000-156885600	Weak transcription	Psoas Muscle	Psoas
12	chr3:156879000-156891800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:156879000-156892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:156879200-156879800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:156879200-156879800	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:156879200-156879800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:156879200-156879800	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:156879200-156879800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:156879200-156879800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:156879200-156879800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr3:156879200-156879800	Enhancers	Adipose Nuclei	Adipose
22	chr3:156879200-156879800	Enhancers	Brain Hippocampus Middle	brain
23	chr3:156879200-156879800	Enhancers	Duodenum Mucosa	Duodenum
24	chr3:156879200-156880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:156879200-156880000	Enhancers	Placenta	Placenta
26	chr3:156879200-156880000	Enhancers	Hela-S3	cervix
27	chr3:156879200-156880200	Enhancers	Fetal Intestine Large	intestine
28	chr3:156879200-156880600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:156879200-156880800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:156879200-156881000	Enhancers	Liver	Liver
31	chr3:156879200-156881400	Weak transcription	Right Ventricle	heart
32	chr3:156879200-156881600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr3:156879200-156881600	Weak transcription	Colonic Mucosa	Colon
34	chr3:156879200-156881800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr3:156879200-156882200	Enhancers	HepG2	liver
36	chr3:156879200-156883000	Weak transcription	Right Atrium	heart
37	chr3:156879200-156884200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:156879200-156884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:156879200-156884400	Weak transcription	Fetal Kidney	kidney
40	chr3:156879200-156891800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:156879200-156891800	Weak transcription	Fetal Stomach	stomach
42	chr3:156879200-156891800	Weak transcription	Fetal Thymus	thymus
43	chr3:156879200-156892000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:156879400-156879800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:156879400-156879800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:156879400-156879800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:156879400-156879800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:156879400-156880000	Enhancers	GM12878-XiMat	blood
49	chr3:156879400-156880000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr3:156879400-156880200	Enhancers	Primary B cells from cord blood	blood

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