Variant report
| Variant | rs34396263 |
|---|---|
| Chromosome Location | chr21:15770576-15770577 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000155304 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10470144 | 0.87[ASN][1000 genomes] |
| rs10470145 | 0.87[ASN][1000 genomes] |
| rs2242661 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2242662 | 0.81[ASN][1000 genomes] |
| rs2822648 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2822649 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2822650 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2822651 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2822661 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28456168 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35244754 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs67163096 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9983469 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064554 | chr21:15676222-15809321 | Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv913403 | chr21:15743387-15786271 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
