Variant report

Variant	rs10470144
Chromosome Location	chr21:15791773-15791774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1040330	0.91[JPT][hapmap]
rs10470145	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12479	0.91[JPT][hapmap]
rs1882881	0.83[JPT][hapmap]
rs2822636	0.91[JPT][hapmap]
rs2822638	0.83[JPT][hapmap]
rs2822642	0.91[JPT][hapmap]
rs2822644	0.91[JPT][hapmap]
rs2822649	0.91[JPT][hapmap]
rs2822650	0.91[JPT][hapmap]
rs2822652	0.91[JPT][hapmap]
rs2822661	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2822662	0.91[JPT][hapmap];0.80[MEX][hapmap]
rs28456168	0.87[ASN][1000 genomes]
rs34396263	0.87[ASN][1000 genomes]
rs67163096	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7282521	0.91[JPT][hapmap]
rs9974630	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064554	chr21:15676222-15809321	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15789800-15792200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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