Variant report

Variant	rs34397861
Chromosome Location	chr16:47471333-47471334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12920194	0.85[AFR][1000 genomes]
rs12928230	0.85[AFR][1000 genomes]
rs34396829	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47426400-47482800	Weak transcription	NH-A	brain
2	chr16:47430400-47485600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:47431600-47478200	Weak transcription	K562	blood
4	chr16:47442600-47483800	Weak transcription	Hela-S3	cervix
5	chr16:47445400-47482600	Weak transcription	NHEK	skin
6	chr16:47445800-47483800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr16:47447800-47471800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr16:47451600-47484000	Weak transcription	Small Intestine	intestine
9	chr16:47459200-47493400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:47459400-47484000	Weak transcription	Pancreas	Pancrea
11	chr16:47459400-47487200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:47459400-47493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:47459600-47471600	Weak transcription	Fetal Intestine Small	intestine
14	chr16:47459600-47487200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:47459600-47493400	Weak transcription	Esophagus	oesophagus
16	chr16:47459800-47471600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr16:47459800-47484600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:47459800-47484800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr16:47459800-47493400	Weak transcription	Right Ventricle	heart
20	chr16:47459800-47494400	Weak transcription	Aorta	Aorta
21	chr16:47460000-47485400	Weak transcription	HSMMtube	muscle
22	chr16:47460200-47471600	Weak transcription	GM12878-XiMat	blood
23	chr16:47460200-47479600	Weak transcription	Ovary	ovary
24	chr16:47460200-47482600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr16:47460200-47482800	Weak transcription	Brain Germinal Matrix	brain
26	chr16:47460200-47483800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr16:47460200-47485600	Weak transcription	Colonic Mucosa	Colon
28	chr16:47460200-47485600	Weak transcription	NHLF	lung
29	chr16:47460200-47486800	Weak transcription	Fetal Kidney	kidney
30	chr16:47460400-47479400	Weak transcription	HepG2	liver
31	chr16:47460400-47483400	Weak transcription	Fetal Brain Male	brain
32	chr16:47461400-47482800	Weak transcription	A549	lung
33	chr16:47461600-47485600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr16:47461800-47485400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr16:47462000-47471600	Weak transcription	Lung	lung
36	chr16:47462000-47471800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:47462000-47477400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr16:47462000-47479400	Weak transcription	Fetal Intestine Large	intestine
39	chr16:47462000-47479600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr16:47462000-47479600	Weak transcription	Adipose Nuclei	Adipose
41	chr16:47462000-47479600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr16:47462000-47479800	Weak transcription	Brain Hippocampus Middle	brain
43	chr16:47462000-47480400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr16:47462000-47482600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr16:47462000-47482600	Weak transcription	Fetal Lung	lung
46	chr16:47462000-47482800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr16:47462000-47482800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr16:47462000-47482800	Weak transcription	Osteobl	bone
49	chr16:47462000-47483000	Weak transcription	Fetal Muscle Leg	muscle
50	chr16:47462000-47483800	Weak transcription	Stomach Smooth Muscle	stomach

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