Variant report

Variant	rs34401899
Chromosome Location	chr2:173383054-173383055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173378324..173380878-chr2:173382092..173384588,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10451559	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930557	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11886058	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11892462	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11895820	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13012115	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021042	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027362	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13027432	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13033614	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13398305	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412041	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17740327	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701269	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701270	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2737084	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463972	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480655	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34277286	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34532264	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34926868	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34938988	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34970908	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35981026	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792259	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56347526	0.95[EUR][1000 genomes]
rs59424951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61486827	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62167823	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62167824	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433365	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739419	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6746243	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580589	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7596665	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173377200-173386000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173378600-173383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:173379800-173384200	Weak transcription	Primary B cells from cord blood	blood

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