Variant report

Variant	rs11892462
Chromosome Location	chr2:173388962-173388963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173378965..173380472-chr2:173388218..173390798,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10178654	0.82[CEU][hapmap]
rs10180021	0.90[CEU][hapmap]
rs10199472	0.82[CEU][hapmap]
rs10201129	0.90[CEU][hapmap]
rs10202550	0.90[CEU][hapmap]
rs10208151	0.82[CEU][hapmap]
rs10210546	0.82[CEU][hapmap]
rs10451559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11886058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887454	0.82[CEU][hapmap]
rs11890159	0.82[CEU][hapmap]
rs11895820	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904366	0.81[CEU][hapmap]
rs12693005	0.90[CEU][hapmap]
rs13007707	0.89[CEU][hapmap]
rs13012115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13021042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13027362	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027432	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13033614	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385403	0.90[CEU][hapmap]
rs13392808	0.82[CEU][hapmap]
rs13394924	0.90[CEU][hapmap]
rs13398305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13412041	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13417334	0.90[CEU][hapmap]
rs16860696	0.82[CEU][hapmap]
rs16860697	0.82[CEU][hapmap]
rs17299956	0.82[CEU][hapmap]
rs17702263	0.90[CEU][hapmap]
rs17740327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1869922	0.90[CEU][hapmap]
rs2701269	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2701270	1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2737084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28463972	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28480655	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884226	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34277286	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34401899	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34532264	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34926868	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34938988	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34970908	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35981026	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56347526	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59424951	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61486827	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167823	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167824	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6433365	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6723872	0.90[CEU][hapmap]
rs6739419	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746243	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6752257	0.90[CEU][hapmap]
rs7580589	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7596665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood

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