Variant report

Variant	rs10208151
Chromosome Location	chr2:173425952-173425953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173420205..173423169-chr2:173425369..173427957,4	MCF-7	breast:
2	chr2:173423971..173427141-chr2:173427438..173431520,4	K562	blood:
3	chr2:173420097..173422198-chr2:173422510..173426199,4	K562	blood:

Variant related genes	Relation type
ENSG00000199866	Chromatin interaction
ENSG00000152256	Chromatin interaction
ENSG00000225205	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10048692	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10048707	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10048825	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181851	0.81[EUR][1000 genomes]
rs10186869	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197678	0.93[ASN][1000 genomes]
rs10199472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207262	0.80[ASN][1000 genomes]
rs10210546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10427189	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10427315	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451559	0.88[CEU][hapmap]
rs1075638	0.81[EUR][1000 genomes]
rs10930562	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs10930565	0.84[EUR][1000 genomes]
rs11887454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891127	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895461	1.00[CHB][hapmap]
rs11896032	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896178	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897165	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897495	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897582	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898137	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11898890	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901110	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901586	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11902810	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902907	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904366	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693007	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990751	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13008835	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13009291	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010205	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012115	0.90[CEU][hapmap]
rs13021042	0.81[CEU][hapmap]
rs13023751	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13024218	0.80[ASN][1000 genomes]
rs13024431	0.80[ASN][1000 genomes]
rs13032610	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032692	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385644	0.93[ASN][1000 genomes]
rs13386103	1.00[ASN][1000 genomes]
rs13388338	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398305	0.82[CEU][hapmap]
rs13401945	0.80[ASN][1000 genomes]
rs13401980	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405998	0.80[ASN][1000 genomes]
rs13408780	0.80[ASN][1000 genomes]
rs13415156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13415174	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425344	0.80[ASN][1000 genomes]
rs1531151	0.80[ASN][1000 genomes]
rs16860696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16860697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17299956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17702263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17740327	0.82[CEU][hapmap]
rs1869922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982410	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290564	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2599267	0.80[ASN][1000 genomes]
rs2606069	0.80[ASN][1000 genomes]
rs28537209	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087500	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34139806	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611798	0.80[ASN][1000 genomes]
rs34707897	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34888332	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35086707	0.80[ASN][1000 genomes]
rs35156154	0.80[ASN][1000 genomes]
rs35665064	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35809888	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880823	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35951155	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35999155	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36118221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3613	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765065	0.82[EUR][1000 genomes]
rs3769321	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs3792259	0.82[CEU][hapmap]
rs3816536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56953655	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59004833	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59104969	0.93[ASN][1000 genomes]
rs62167832	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62167835	0.84[EUR][1000 genomes]
rs62169270	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62169301	0.80[ASN][1000 genomes]
rs66460331	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710129	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs6723872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738196	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs6752257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752386	0.84[EUR][1000 genomes]
rs70937080	0.93[ASN][1000 genomes]
rs7566884	0.93[ASN][1000 genomes]
rs7567092	0.93[ASN][1000 genomes]
rs7596665	0.90[CEU][hapmap]
rs836589	0.80[ASN][1000 genomes]
rs9287957	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv3035	chr2:173419058-173463901	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173421400-173436200	Weak transcription	Spleen	Spleen
2	chr2:173421600-173426000	Weak transcription	Esophagus	oesophagus
3	chr2:173421600-173427200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:173421600-173430000	Weak transcription	Gastric	stomach
5	chr2:173421600-173431000	Weak transcription	Aorta	Aorta
6	chr2:173421600-173436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:173421600-173436000	Weak transcription	Lung	lung
8	chr2:173421600-173453400	Weak transcription	Pancreas	Pancrea
9	chr2:173421800-173426000	Weak transcription	HSMMtube	muscle
10	chr2:173421800-173428400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:173421800-173429200	Weak transcription	Placenta	Placenta
12	chr2:173421800-173430000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:173421800-173430000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:173421800-173432000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:173421800-173439000	Weak transcription	Psoas Muscle	Psoas
16	chr2:173421800-173443600	Weak transcription	Ovary	ovary
17	chr2:173421800-173465200	Weak transcription	Small Intestine	intestine
18	chr2:173422000-173427000	Weak transcription	HSMM	muscle
19	chr2:173422000-173428000	Weak transcription	NH-A	brain
20	chr2:173422000-173428800	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:173422000-173429400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:173422000-173437600	Weak transcription	A549	lung
23	chr2:173422000-173438600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:173422000-173439000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr2:173422000-173443600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:173422200-173426000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:173422200-173426000	Weak transcription	Fetal Lung	lung
28	chr2:173422200-173427000	Weak transcription	HUVEC	blood vessel
29	chr2:173422200-173427000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr2:173422200-173429200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr2:173422200-173431000	Weak transcription	Brain Angular Gyrus	brain
32	chr2:173422200-173431600	Weak transcription	Osteobl	bone
33	chr2:173422200-173436200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:173422200-173437000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr2:173422200-173437000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:173422200-173438600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:173422200-173451000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:173422400-173426000	Weak transcription	Brain Anterior Caudate	brain
39	chr2:173422400-173427200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:173422400-173427600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr2:173422600-173426400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:173422600-173427200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr2:173422600-173438800	Weak transcription	Brain Substantia Nigra	brain
44	chr2:173422800-173429400	Weak transcription	Adipose Nuclei	Adipose
45	chr2:173422800-173430200	Weak transcription	Right Ventricle	heart
46	chr2:173422800-173430200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:173423000-173430800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr2:173423000-173431200	Weak transcription	NHLF	lung
49	chr2:173423000-173433800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr2:173423200-173426000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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