Variant report

Variant	rs35156154
Chromosome Location	chr2:173525277-173525278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10048692	0.80[ASN][1000 genomes]
rs10048707	0.80[ASN][1000 genomes]
rs10048825	0.80[ASN][1000 genomes]
rs10176813	0.80[ASN][1000 genomes]
rs10178654	0.80[ASN][1000 genomes]
rs10180021	0.80[ASN][1000 genomes]
rs10186869	0.80[ASN][1000 genomes]
rs10197678	0.87[ASN][1000 genomes]
rs10199472	0.80[ASN][1000 genomes]
rs10201129	0.80[ASN][1000 genomes]
rs10202550	0.80[ASN][1000 genomes]
rs10207262	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208151	0.80[ASN][1000 genomes]
rs10210546	0.80[ASN][1000 genomes]
rs10427189	0.80[ASN][1000 genomes]
rs10427315	0.80[ASN][1000 genomes]
rs11887454	0.80[ASN][1000 genomes]
rs11890159	0.80[ASN][1000 genomes]
rs11891127	0.80[ASN][1000 genomes]
rs11896032	0.80[ASN][1000 genomes]
rs11896178	0.80[ASN][1000 genomes]
rs11897165	0.80[ASN][1000 genomes]
rs11897495	0.80[ASN][1000 genomes]
rs11897582	0.80[ASN][1000 genomes]
rs11898137	0.80[ASN][1000 genomes]
rs11898890	0.80[ASN][1000 genomes]
rs11901110	0.80[ASN][1000 genomes]
rs11902810	0.80[ASN][1000 genomes]
rs11902907	0.80[ASN][1000 genomes]
rs11904366	0.80[ASN][1000 genomes]
rs12693005	0.80[ASN][1000 genomes]
rs12693007	0.80[ASN][1000 genomes]
rs12990751	0.80[ASN][1000 genomes]
rs13009291	0.80[ASN][1000 genomes]
rs13010205	0.80[ASN][1000 genomes]
rs13023751	0.80[ASN][1000 genomes]
rs13024218	1.00[ASN][1000 genomes]
rs13024431	1.00[ASN][1000 genomes]
rs13032610	0.80[ASN][1000 genomes]
rs13032692	0.80[ASN][1000 genomes]
rs13385403	0.80[ASN][1000 genomes]
rs13385644	0.87[ASN][1000 genomes]
rs13386103	0.80[ASN][1000 genomes]
rs13388338	0.80[ASN][1000 genomes]
rs13392808	0.80[ASN][1000 genomes]
rs13394924	0.80[ASN][1000 genomes]
rs13401945	1.00[ASN][1000 genomes]
rs13401980	0.80[ASN][1000 genomes]
rs13405998	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415156	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415174	0.80[ASN][1000 genomes]
rs13417334	0.80[ASN][1000 genomes]
rs13425344	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531151	1.00[ASN][1000 genomes]
rs16860696	0.80[ASN][1000 genomes]
rs16860697	0.80[ASN][1000 genomes]
rs17299956	0.80[ASN][1000 genomes]
rs17702263	0.80[ASN][1000 genomes]
rs1869922	0.80[ASN][1000 genomes]
rs1982410	0.80[ASN][1000 genomes]
rs2290564	0.80[ASN][1000 genomes]
rs2599267	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2606069	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537209	0.80[ASN][1000 genomes]
rs3087500	0.80[ASN][1000 genomes]
rs34139806	0.80[ASN][1000 genomes]
rs34611798	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707897	0.80[ASN][1000 genomes]
rs34888332	0.80[ASN][1000 genomes]
rs35086707	1.00[ASN][1000 genomes]
rs35665064	0.80[ASN][1000 genomes]
rs35809888	0.80[ASN][1000 genomes]
rs35880823	0.80[ASN][1000 genomes]
rs35951155	0.80[ASN][1000 genomes]
rs36118221	0.80[ASN][1000 genomes]
rs3613	0.80[ASN][1000 genomes]
rs59104969	0.87[ASN][1000 genomes]
rs62169270	0.80[ASN][1000 genomes]
rs62169301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66460331	0.80[ASN][1000 genomes]
rs6723872	0.80[ASN][1000 genomes]
rs6752257	0.80[ASN][1000 genomes]
rs7566884	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7567092	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs836589	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287957	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762962	chr2:173493078-173527311	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173521400-173536800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:173522800-173532200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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