Variant report

Variant	rs34402366
Chromosome Location	chr8:64141127-64141128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17209651	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64139400-64143000	Weak transcription	HSMMtube	muscle
2	chr8:64139400-64143600	Weak transcription	HMEC	breast
3	chr8:64139400-64143800	Weak transcription	HSMM	muscle
4	chr8:64139400-64144000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:64139400-64144200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:64139600-64141800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:64139600-64143800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:64139600-64143800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:64139600-64144000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:64139600-64144000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:64139600-64144000	Weak transcription	Osteobl	bone
12	chr8:64139600-64144400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:64140000-64143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:64140000-64143800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:64140000-64143800	Weak transcription	HUVEC	blood vessel
16	chr8:64140000-64143800	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links