Variant report

Variant	rs34402412
Chromosome Location	chr15:76020525-76020526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76015921..76017940-chr15:76018732..76020537,2	K562	blood:
2	chr15:75978548..75980308-chr15:76018385..76020892,2	K562	blood:
3	chr15:76019014..76021554-chr15:76023270..76025414,2	MCF-7	breast:
4	chr15:76020341..76021282-chr15:76094404..76095018,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182950	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10163112	0.95[EUR][1000 genomes]
rs10519109	0.85[EUR][1000 genomes]
rs11852712	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11854305	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11858818	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12898509	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12899163	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12899303	0.85[EUR][1000 genomes]
rs12900007	0.87[EUR][1000 genomes]
rs12900167	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12903661	0.85[EUR][1000 genomes]
rs12904654	0.91[EUR][1000 genomes]
rs12905062	0.85[EUR][1000 genomes]
rs12905730	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13329104	0.95[EUR][1000 genomes]
rs1996302	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1996303	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2002668	0.91[EUR][1000 genomes]
rs2004920	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2009508	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2017312	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2290484	0.83[EUR][1000 genomes]
rs2405718	0.84[EUR][1000 genomes]
rs2405882	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28404806	0.87[EUR][1000 genomes]
rs28541422	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28615348	0.91[EUR][1000 genomes]
rs28651447	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28657001	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28688252	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28695212	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28695716	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28744558	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28833005	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28837134	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34469290	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34571038	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34605750	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34611707	0.97[EUR][1000 genomes]
rs34941412	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35019194	0.84[EUR][1000 genomes]
rs35135316	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35136767	0.82[EUR][1000 genomes]
rs35147271	0.83[EUR][1000 genomes]
rs35745834	0.84[EUR][1000 genomes]
rs35842909	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36057011	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4503758	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55744943	0.84[EUR][1000 genomes]
rs57905971	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60214227	0.86[EUR][1000 genomes]
rs67908345	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71403504	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7163633	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7165531	0.84[EUR][1000 genomes]
rs7181595	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74026532	0.84[EUR][1000 genomes]
rs8026234	0.84[EUR][1000 genomes]
rs8027311	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8028002	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
4	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76013600-76025000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:76013800-76029800	Weak transcription	HSMM	muscle
3	chr15:76016600-76023600	Weak transcription	Brain Angular Gyrus	brain
4	chr15:76016600-76023800	Weak transcription	Ovary	ovary
5	chr15:76016600-76024000	Weak transcription	Brain Germinal Matrix	brain
6	chr15:76016800-76023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:76016800-76023800	Weak transcription	Right Ventricle	heart
8	chr15:76016800-76025200	Weak transcription	Pancreas	Pancrea
9	chr15:76017000-76020600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:76017000-76020600	Weak transcription	HMEC	breast
11	chr15:76017200-76023600	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:76017200-76023600	Weak transcription	Fetal Lung	lung
13	chr15:76017600-76023600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:76017800-76023200	Weak transcription	Fetal Stomach	stomach
15	chr15:76018000-76023000	Weak transcription	Spleen	Spleen
16	chr15:76018600-76020600	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:76018800-76023800	Weak transcription	Fetal Heart	heart
18	chr15:76018800-76024400	Weak transcription	Left Ventricle	heart
19	chr15:76019400-76020800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:76019800-76023800	Weak transcription	Placenta	Placenta
21	chr15:76020000-76025000	Weak transcription	Esophagus	oesophagus
22	chr15:76020200-76020600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:76020200-76021000	Enhancers	Stomach Smooth Muscle	stomach
24	chr15:76020200-76025200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:76020400-76020600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:76020400-76020600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:76020400-76020600	Enhancers	Fetal Muscle Trunk	muscle
28	chr15:76020400-76020800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:76020400-76021000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:76020400-76021000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:76020400-76021400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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