Variant report

Variant	rs34605750
Chromosome Location	chr15:76032283-76032284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:76032248-76032298	ovcar-3	ovarian:	n/a
2	chr15:76032248-76032298	HL-60	blood:	n/a
3	chr15:76032248-76032298	AG09309	skin:	n/a
4	chr15:76032248-76032298	AG04449	skin:	fetal
5	chr15:76032248-76032298	HCM	heart:	n/a
6	chr15:76032248-76032298	ProgFib	skin:	n/a
7	chr15:76032248-76032298	HRCEpiC	kidney:	n/a
8	chr15:76032248-76032298	AoSMC	blood vessel:	n/a
9	chr15:76032248-76032298	NHBE	bronchial:	n/a
10	chr15:76032248-76032298	HPAEpiC	pulmonary alveolar:	n/a
11	chr15:76032248-76032298	HCF	heart:	n/a
12	chr15:76032248-76032298	HRE	kidney:	n/a
13	chr15:76032248-76032298	SK-N-SH_RA	brain:	n/a
14	chr15:76032248-76032298	H1-hESC	embryonic stem cell:	embryo
15	chr15:76032248-76032298	GM12891	blood:	n/a
16	chr15:76032248-76032298	NT2-D1	testis:	n/a
17	chr15:76032248-76032298	IMR90	lung:	fetal
18	chr15:76032248-76032298	GM06990	blood:	n/a
19	chr15:76032248-76032298	MCF-7	breast:	n/a
20	chr15:76032248-76032298	Caco-2	colon:	n/a
21	chr15:76032248-76032298	HMEC	breast:	n/a
22	chr15:76032248-76032298	HAEpiC	amniotic membrane:	n/a
23	chr15:76032248-76032298	SKMC	muscle:	n/a
24	chr15:76032248-76032298	NB4	blood:	n/a
25	chr15:76032248-76032298	ECC-1	luminal epithelium:	n/a
26	chr15:76032248-76032298	HRPEpiC	eye:	n/a
27	chr15:76032248-76032298	AG10803	skin:	n/a
28	chr15:76032248-76032298	HCPEpiC	choroid plexus:	n/a
29	chr15:76032248-76032298	PFSK-1	brain:	n/a
30	chr15:76032248-76032298	NHDF-neo	bronchial:	n/a
31	chr15:76032248-76032298	SAEC	small airway:	n/a
32	chr15:76032248-76032298	K562	blood:	n/a
33	chr15:76032248-76032298	BE2_C	brain:	n/a
34	chr15:76032248-76032298	GM12878	blood:	n/a
35	chr15:76032248-76032298	HEK293	kidney:	embryo
36	chr15:76032248-76032298	Jurkat	blood:	n/a
37	chr15:76032248-76032298	Hepatocyte	liver:	n/a
38	chr15:76032248-76032298	HNPCEpiC	eye:	n/a
39	chr15:76032248-76032298	HIPEpiC	eye:	n/a
40	chr15:76032248-76032298	HepG2	liver:	n/a
41	chr15:76032248-76032298	HEEpiC	esophagus:	n/a
42	chr15:76032248-76032298	RPTEC	kidney:	n/a
43	chr15:76032248-76032298	CMK	blood:	n/a
44	chr15:76032248-76032298	NH-A	brain:	n/a
45	chr15:76032248-76032298	PrEC	prostate:	n/a
46	chr15:76032248-76032298	AG09319	gingival:	n/a
47	chr15:76032248-76032298	GM19239	blood:	n/a
48	chr15:76032248-76032298	BJ	skin:	n/a
49	chr15:76032248-76032298	LNCaP	prostate:	n/a
50	chr15:76032248-76032298	MCF10A-Er-Src	breast:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76030966..76033044-chr15:76037778..76039955,4	K562	blood:
2	chr15:76030875..76032709-chr15:76036980..76039783,2	MCF-7	breast:
3	chr15:76024107..76026384-chr15:76031039..76032917,2	MCF-7	breast:

No data

Variant related genes	Relation type
DNM1P35	CpG island
ENSG00000260815	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10163112	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10519109	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852472	0.82[ASN][1000 genomes]
rs11852712	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11854305	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11858818	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898509	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12899163	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12899303	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900007	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12900167	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12903661	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904654	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12905062	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13329104	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1823175	0.91[ASN][1000 genomes]
rs1850261	0.91[ASN][1000 genomes]
rs1964473	0.89[ASN][1000 genomes]
rs1964474	0.88[ASN][1000 genomes]
rs1996302	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996303	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2002668	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2004630	0.88[ASN][1000 genomes]
rs2004920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2009508	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010392	0.93[ASN][1000 genomes]
rs2017312	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290484	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2405718	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2405719	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2405882	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404806	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28541422	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615348	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28651447	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657001	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28688252	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695212	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695716	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28744558	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833005	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28837134	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34243492	0.89[ASN][1000 genomes]
rs34402412	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34469290	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34571038	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611707	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34909574	0.81[ASN][1000 genomes]
rs34941412	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35019194	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35135316	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35136767	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35147271	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237189	0.82[ASN][1000 genomes]
rs35411779	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35575236	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35745834	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35842909	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880865	0.82[ASN][1000 genomes]
rs36057011	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751536	0.82[ASN][1000 genomes]
rs3845233	0.88[ASN][1000 genomes]
rs3845234	0.88[ASN][1000 genomes]
rs3850092	0.89[ASN][1000 genomes]
rs3861184	0.91[ASN][1000 genomes]
rs4503758	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55744943	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57905971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214227	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66838310	0.89[ASN][1000 genomes]
rs67908345	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71403504	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71403505	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71462532	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7163633	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7165531	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7181595	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74026532	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8026234	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027311	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8028002	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037672	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8041390	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8041670	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
4	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76031400-76032400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:76031400-76032400	Enhancers	Spleen	Spleen
3	chr15:76031600-76033000	Weak transcription	NHEK	skin
4	chr15:76031600-76033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:76031800-76032400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr15:76031800-76032400	Enhancers	Pancreas	Pancrea
7	chr15:76031800-76032800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:76031800-76032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:76031800-76034000	Weak transcription	Adipose Nuclei	Adipose
10	chr15:76032000-76032600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:76032200-76032400	Enhancers	K562	blood
12	chr15:76032200-76032600	Enhancers	Brain Anterior Caudate	brain

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