Variant report

Variant	rs1964473
Chromosome Location	chr15:76067319-76067320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76066670..76069216-chr15:76135374..76137197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10519109	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs11634290	0.92[JPT][hapmap]
rs11636280	0.82[JPT][hapmap]
rs11852472	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11852712	0.88[ASN][1000 genomes]
rs11854305	0.85[ASN][1000 genomes]
rs11858818	0.89[ASN][1000 genomes]
rs12101948	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12594344	0.84[EUR][1000 genomes]
rs12898509	0.93[ASN][1000 genomes]
rs12899163	0.86[ASN][1000 genomes]
rs12899303	0.89[ASN][1000 genomes]
rs12900007	0.83[ASN][1000 genomes]
rs12900167	0.84[ASN][1000 genomes]
rs12903661	0.89[ASN][1000 genomes]
rs12905062	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12905730	0.93[ASN][1000 genomes]
rs1823175	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1838939	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1850260	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1850261	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996302	0.89[ASN][1000 genomes]
rs1996303	0.85[ASN][1000 genomes]
rs2004630	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2004631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2004920	0.87[ASN][1000 genomes]
rs2009508	0.89[ASN][1000 genomes]
rs2010392	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017312	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2028948	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2405718	0.94[ASN][1000 genomes]
rs2405882	0.89[ASN][1000 genomes]
rs28404806	0.88[ASN][1000 genomes]
rs28541422	0.89[ASN][1000 genomes]
rs28651447	0.89[ASN][1000 genomes]
rs28657001	0.89[ASN][1000 genomes]
rs28688252	0.89[ASN][1000 genomes]
rs28695212	0.89[ASN][1000 genomes]
rs28695716	0.85[ASN][1000 genomes]
rs28744558	0.89[ASN][1000 genomes]
rs28833005	0.89[ASN][1000 genomes]
rs28837134	0.89[ASN][1000 genomes]
rs34243492	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469290	0.89[ASN][1000 genomes]
rs34571038	0.89[ASN][1000 genomes]
rs34605750	0.89[ASN][1000 genomes]
rs34611707	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs34909574	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34941412	0.83[ASN][1000 genomes]
rs34951369	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35019194	0.89[ASN][1000 genomes]
rs35032880	0.83[AMR][1000 genomes]
rs35135316	0.83[ASN][1000 genomes]
rs35136767	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35147271	0.89[ASN][1000 genomes]
rs35237189	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35575236	0.82[ASN][1000 genomes]
rs35745834	0.88[ASN][1000 genomes]
rs35842909	0.89[ASN][1000 genomes]
rs35880865	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36057011	0.89[ASN][1000 genomes]
rs3751536	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3845233	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3845234	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850092	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3861184	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4503758	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs4616261	0.92[JPT][hapmap]
rs4886742	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55744943	0.94[ASN][1000 genomes]
rs56290532	0.84[EUR][1000 genomes]
rs57181727	0.91[EUR][1000 genomes]
rs57905971	0.89[ASN][1000 genomes]
rs66838310	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67908345	0.83[ASN][1000 genomes]
rs71403504	0.83[ASN][1000 genomes]
rs7165531	0.93[ASN][1000 genomes]
rs7181595	0.90[JPT][hapmap];0.94[YRI][hapmap];0.80[ASN][1000 genomes]
rs74026532	0.88[ASN][1000 genomes]
rs8026234	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8027311	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8028002	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs8037672	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76061000-76067400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:76062800-76068000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:76062800-76068400	Weak transcription	Pancreas	Pancrea
4	chr15:76063200-76067800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:76063200-76068000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:76063600-76068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:76063800-76067800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:76063800-76068000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:76063800-76068000	Weak transcription	A549	lung
10	chr15:76063800-76068400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:76064000-76068400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:76064000-76068600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:76064200-76068000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:76064400-76068000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:76064400-76068400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:76064600-76068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:76065400-76068000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:76065600-76067800	Weak transcription	HepG2	liver
19	chr15:76067200-76068200	Weak transcription	Liver	Liver

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