Variant report

Variant	rs35237189
Chromosome Location	chr15:76073218-76073219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr15:76073211-76073496	Hela-S3	cervix:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CSPG4-3	chr15:76072631-76073622	refGeneNc_2689_NR_026998

Variant related genes	Relation type
RN7SL319P	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10519109	0.82[ASN][1000 genomes]
rs11852472	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852712	0.80[ASN][1000 genomes]
rs11858818	0.82[ASN][1000 genomes]
rs12101948	0.95[EUR][1000 genomes]
rs12594344	0.81[EUR][1000 genomes]
rs12898509	0.85[ASN][1000 genomes]
rs12899303	0.82[ASN][1000 genomes]
rs12903661	0.82[ASN][1000 genomes]
rs12905062	0.82[ASN][1000 genomes]
rs12905730	0.85[ASN][1000 genomes]
rs1823175	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1838939	0.95[EUR][1000 genomes]
rs1850260	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1850261	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1964473	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1964474	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1996302	0.81[ASN][1000 genomes]
rs2004630	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2004631	0.90[EUR][1000 genomes]
rs2004920	0.80[ASN][1000 genomes]
rs2009508	0.82[ASN][1000 genomes]
rs2010392	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2028948	0.96[EUR][1000 genomes]
rs2405718	0.86[ASN][1000 genomes]
rs2405882	0.82[ASN][1000 genomes]
rs28404806	0.80[ASN][1000 genomes]
rs28541422	0.82[ASN][1000 genomes]
rs28651447	0.82[ASN][1000 genomes]
rs28657001	0.82[ASN][1000 genomes]
rs28688252	0.82[ASN][1000 genomes]
rs28695212	0.82[ASN][1000 genomes]
rs28744558	0.82[ASN][1000 genomes]
rs28833005	0.82[ASN][1000 genomes]
rs28837134	0.82[ASN][1000 genomes]
rs34243492	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34469290	0.82[ASN][1000 genomes]
rs34571038	0.82[ASN][1000 genomes]
rs34605750	0.82[ASN][1000 genomes]
rs34909574	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34951369	0.95[EUR][1000 genomes]
rs35019194	0.82[ASN][1000 genomes]
rs35136767	0.86[ASN][1000 genomes]
rs35147271	0.82[ASN][1000 genomes]
rs35745834	0.80[ASN][1000 genomes]
rs35842909	0.82[ASN][1000 genomes]
rs35880865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057011	0.82[ASN][1000 genomes]
rs3751536	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845233	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3845234	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3850092	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3861184	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886742	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55744943	0.86[ASN][1000 genomes]
rs56290532	0.82[EUR][1000 genomes]
rs57181727	0.88[EUR][1000 genomes]
rs57905971	0.82[ASN][1000 genomes]
rs66838310	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7165531	0.85[ASN][1000 genomes]
rs74026532	0.80[ASN][1000 genomes]
rs8026234	0.82[ASN][1000 genomes]
rs8037672	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv904397	chr15:76072030-76119092	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76068600-76075200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links