Variant report

Variant	rs66838310
Chromosome Location	chr15:76068466-76068467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76066670..76069216-chr15:76135374..76137197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10519109	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11852472	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11852712	0.88[ASN][1000 genomes]
rs11854305	0.85[ASN][1000 genomes]
rs11858818	0.89[ASN][1000 genomes]
rs12101948	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12594344	0.83[EUR][1000 genomes]
rs12898509	0.93[ASN][1000 genomes]
rs12899163	0.86[ASN][1000 genomes]
rs12899303	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12900007	0.83[ASN][1000 genomes]
rs12900167	0.84[ASN][1000 genomes]
rs12903661	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12905062	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12905730	0.93[ASN][1000 genomes]
rs1823175	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1838939	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1850260	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1850261	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964473	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964474	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996302	0.89[ASN][1000 genomes]
rs1996303	0.85[ASN][1000 genomes]
rs2004630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2004631	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2004920	0.87[ASN][1000 genomes]
rs2009508	0.89[ASN][1000 genomes]
rs2010392	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017312	0.85[ASN][1000 genomes]
rs2028948	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2290484	0.81[AMR][1000 genomes]
rs2405718	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2405882	0.89[ASN][1000 genomes]
rs28404806	0.88[ASN][1000 genomes]
rs28541422	0.89[ASN][1000 genomes]
rs28651447	0.89[ASN][1000 genomes]
rs28657001	0.89[ASN][1000 genomes]
rs28688252	0.89[ASN][1000 genomes]
rs28695212	0.89[ASN][1000 genomes]
rs28695716	0.85[ASN][1000 genomes]
rs28744558	0.89[ASN][1000 genomes]
rs28833005	0.89[ASN][1000 genomes]
rs28837134	0.89[ASN][1000 genomes]
rs34243492	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469290	0.89[ASN][1000 genomes]
rs34571038	0.89[ASN][1000 genomes]
rs34605750	0.89[ASN][1000 genomes]
rs34611707	0.83[ASN][1000 genomes]
rs34909574	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34941412	0.83[ASN][1000 genomes]
rs34951369	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35019194	0.89[ASN][1000 genomes]
rs35032880	0.84[AMR][1000 genomes]
rs35135316	0.83[ASN][1000 genomes]
rs35136767	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35147271	0.89[ASN][1000 genomes]
rs35237189	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35575236	0.82[ASN][1000 genomes]
rs35745834	0.88[ASN][1000 genomes]
rs35842909	0.89[ASN][1000 genomes]
rs35880865	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36057011	0.89[ASN][1000 genomes]
rs3751536	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3845233	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3845234	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850092	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3861184	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4503758	0.85[ASN][1000 genomes]
rs4886742	0.96[EUR][1000 genomes]
rs55744943	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56290532	0.85[EUR][1000 genomes]
rs57181727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57905971	0.89[ASN][1000 genomes]
rs67908345	0.83[ASN][1000 genomes]
rs71403504	0.83[ASN][1000 genomes]
rs7165531	0.93[ASN][1000 genomes]
rs7181595	0.80[ASN][1000 genomes]
rs74026532	0.88[ASN][1000 genomes]
rs8026234	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8027311	0.85[ASN][1000 genomes]
rs8028002	0.85[ASN][1000 genomes]
rs8037672	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76064000-76068600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:76067600-76068800	Enhancers	Placenta	Placenta
3	chr15:76067800-76068600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:76067800-76068800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:76067800-76068800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:76067800-76068800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:76068000-76068600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:76068000-76068600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:76068000-76068800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:76068000-76069000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:76068000-76069000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:76068000-76069000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr15:76068000-76069000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:76068000-76069200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:76068000-76069800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:76068000-76069800	Enhancers	A549	lung
17	chr15:76068000-76070200	Enhancers	NHDF-Ad	bronchial
18	chr15:76068000-76070400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:76068000-76070600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr15:76068000-76070600	Enhancers	NH-A	brain
21	chr15:76068000-76070800	Enhancers	Osteobl	bone
22	chr15:76068000-76071000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:76068200-76068600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr15:76068200-76068600	Enhancers	K562	blood
25	chr15:76068200-76068800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:76068200-76068800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:76068200-76068800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:76068200-76068800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:76068200-76069000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr15:76068200-76069200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:76068200-76069200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr15:76068200-76069800	Enhancers	Liver	Liver
33	chr15:76068200-76070000	Enhancers	NHLF	lung
34	chr15:76068200-76070200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:76068200-76070200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:76068200-76070200	Enhancers	Stomach Smooth Muscle	stomach
37	chr15:76068200-76070200	Enhancers	HSMM	muscle
38	chr15:76068200-76070600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:76068200-76071000	Enhancers	HSMMtube	muscle
40	chr15:76068400-76068600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:76068400-76068600	Bivalent Enhancer	Fetal Stomach	stomach
42	chr15:76068400-76068600	Enhancers	HMEC	breast
43	chr15:76068400-76068800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:76068400-76068800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr15:76068400-76068800	Enhancers	Adipose Nuclei	Adipose
46	chr15:76068400-76068800	Bivalent Enhancer	Fetal Muscle Leg	muscle
47	chr15:76068400-76068800	Enhancers	Pancreas	Pancrea
48	chr15:76068400-76068800	Enhancers	Placenta Amnion	Placenta Amnion
49	chr15:76068400-76068800	Enhancers	NHEK	skin
50	chr15:76068400-76069600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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