Variant report

Variant	rs1850260
Chromosome Location	chr15:76068787-76068788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76066670..76069216-chr15:76135374..76137197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11852472	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12101948	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12594344	0.85[EUR][1000 genomes]
rs1823175	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1838939	0.94[EUR][1000 genomes]
rs1850261	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1964473	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1964474	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2004630	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2004631	0.90[EUR][1000 genomes]
rs2010392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2028948	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34243492	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34909574	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34951369	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35237189	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35880865	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3751536	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3845233	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3845234	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850092	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3861184	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4886742	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56290532	0.86[EUR][1000 genomes]
rs57181727	0.87[EUR][1000 genomes]
rs66838310	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76067600-76068800	Enhancers	Placenta	Placenta
2	chr15:76067800-76068800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:76067800-76068800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:76067800-76068800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:76068000-76068800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:76068000-76069000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:76068000-76069000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr15:76068000-76069000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:76068000-76069000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:76068000-76069200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:76068000-76069800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:76068000-76069800	Enhancers	A549	lung
13	chr15:76068000-76070200	Enhancers	NHDF-Ad	bronchial
14	chr15:76068000-76070400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:76068000-76070600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:76068000-76070600	Enhancers	NH-A	brain
17	chr15:76068000-76070800	Enhancers	Osteobl	bone
18	chr15:76068000-76071000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:76068200-76068800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:76068200-76068800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:76068200-76068800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:76068200-76068800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:76068200-76069000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:76068200-76069200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:76068200-76069200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:76068200-76069800	Enhancers	Liver	Liver
27	chr15:76068200-76070000	Enhancers	NHLF	lung
28	chr15:76068200-76070200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:76068200-76070200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:76068200-76070200	Enhancers	Stomach Smooth Muscle	stomach
31	chr15:76068200-76070200	Enhancers	HSMM	muscle
32	chr15:76068200-76070600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:76068200-76071000	Enhancers	HSMMtube	muscle
34	chr15:76068400-76068800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:76068400-76068800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr15:76068400-76068800	Enhancers	Adipose Nuclei	Adipose
37	chr15:76068400-76068800	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr15:76068400-76068800	Enhancers	Pancreas	Pancrea
39	chr15:76068400-76068800	Enhancers	Placenta Amnion	Placenta Amnion
40	chr15:76068400-76068800	Enhancers	NHEK	skin
41	chr15:76068400-76069600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:76068400-76069800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:76068400-76071000	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr15:76068400-76071000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:76068400-76071000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:76068400-76071000	Enhancers	HepG2	liver
47	chr15:76068600-76068800	Flanking Active TSS	K562	blood
48	chr15:76068600-76069800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:76068600-76069800	Enhancers	Colon Smooth Muscle	Colon
50	chr15:76068600-76069800	Enhancers	Rectal Smooth Muscle	rectum

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