Variant report

Variant	rs3850092
Chromosome Location	chr15:76064098-76064099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr15:76063864-76064329	HepG2	liver:	n/a	n/a
2	POU2F2	chr15:76063460-76064151	GM12878	blood:	n/a	n/a
3	GATA2	chr15:76063814-76064139	K562	blood:	n/a	chr15:76064007-76064019 chr15:76063892-76063899
4	POLR2A	chr15:76063340-76064387	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000187812	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10519109	0.89[ASN][1000 genomes]
rs11852472	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852712	0.87[ASN][1000 genomes]
rs11854305	0.87[ASN][1000 genomes]
rs11858818	0.89[ASN][1000 genomes]
rs12101948	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12898509	0.88[ASN][1000 genomes]
rs12899163	0.88[ASN][1000 genomes]
rs12899303	0.89[ASN][1000 genomes]
rs12900007	0.82[ASN][1000 genomes]
rs12900167	0.85[ASN][1000 genomes]
rs12903661	0.89[ASN][1000 genomes]
rs12905062	0.89[ASN][1000 genomes]
rs12905730	0.88[ASN][1000 genomes]
rs1823175	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1838939	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1850260	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1850261	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1964473	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1964474	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1996302	0.88[ASN][1000 genomes]
rs1996303	0.84[ASN][1000 genomes]
rs2004630	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2004631	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2004920	0.87[ASN][1000 genomes]
rs2009508	0.89[ASN][1000 genomes]
rs2010392	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017312	0.87[ASN][1000 genomes]
rs2028948	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2405718	0.89[ASN][1000 genomes]
rs2405882	0.89[ASN][1000 genomes]
rs28404806	0.87[ASN][1000 genomes]
rs28541422	0.89[ASN][1000 genomes]
rs28651447	0.89[ASN][1000 genomes]
rs28657001	0.89[ASN][1000 genomes]
rs28688252	0.89[ASN][1000 genomes]
rs28695212	0.89[ASN][1000 genomes]
rs28695716	0.87[ASN][1000 genomes]
rs28744558	0.89[ASN][1000 genomes]
rs28833005	0.89[ASN][1000 genomes]
rs28837134	0.89[ASN][1000 genomes]
rs34243492	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34469290	0.89[ASN][1000 genomes]
rs34571038	0.89[ASN][1000 genomes]
rs34605750	0.89[ASN][1000 genomes]
rs34611707	0.85[ASN][1000 genomes]
rs34909574	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34941412	0.85[ASN][1000 genomes]
rs34951369	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35019194	0.89[ASN][1000 genomes]
rs35135316	0.85[ASN][1000 genomes]
rs35136767	0.89[ASN][1000 genomes]
rs35147271	0.89[ASN][1000 genomes]
rs35237189	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35745834	0.87[ASN][1000 genomes]
rs35842909	0.89[ASN][1000 genomes]
rs35880865	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36057011	0.89[ASN][1000 genomes]
rs3751536	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3845233	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3845234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3861184	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4503758	0.87[ASN][1000 genomes]
rs4886742	0.93[EUR][1000 genomes]
rs55744943	0.89[ASN][1000 genomes]
rs56290532	0.81[EUR][1000 genomes]
rs57181727	0.89[EUR][1000 genomes]
rs57905971	0.89[ASN][1000 genomes]
rs66838310	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67908345	0.83[ASN][1000 genomes]
rs71403504	0.83[ASN][1000 genomes]
rs7165531	0.88[ASN][1000 genomes]
rs7181595	0.80[ASN][1000 genomes]
rs74026532	0.87[ASN][1000 genomes]
rs8026234	0.89[ASN][1000 genomes]
rs8027311	0.87[ASN][1000 genomes]
rs8028002	0.87[ASN][1000 genomes]
rs8037672	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv3427661	chr15:76063097-76066495	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76061000-76067400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:76062000-76067200	Enhancers	Liver	Liver
3	chr15:76062400-76065400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr15:76062400-76065600	Enhancers	HepG2	liver
5	chr15:76062600-76064400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:76062800-76068000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:76062800-76068400	Weak transcription	Pancreas	Pancrea
8	chr15:76063000-76064400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:76063000-76064600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:76063200-76067800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:76063200-76068000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:76063600-76068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:76063800-76064200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:76063800-76067800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:76063800-76068000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:76063800-76068000	Weak transcription	A549	lung
17	chr15:76063800-76068400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:76064000-76068400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:76064000-76068600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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