Variant report

Variant	rs35411779
Chromosome Location	chr15:76007946-76007947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10163112	0.81[EUR][1000 genomes]
rs10519109	0.85[ASN][1000 genomes]
rs11852712	0.87[ASN][1000 genomes]
rs11854305	0.91[ASN][1000 genomes]
rs11858818	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12898509	0.82[ASN][1000 genomes]
rs12899163	0.90[ASN][1000 genomes]
rs12899303	0.85[ASN][1000 genomes]
rs12900007	0.82[ASN][1000 genomes]
rs12900167	0.87[ASN][1000 genomes]
rs12903661	0.85[ASN][1000 genomes]
rs12905062	0.85[ASN][1000 genomes]
rs12905730	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13329104	0.81[EUR][1000 genomes]
rs1996302	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1996303	0.81[AMR][1000 genomes]
rs2004920	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2009508	0.85[ASN][1000 genomes]
rs2017312	0.91[ASN][1000 genomes]
rs2405718	0.83[ASN][1000 genomes]
rs2405882	0.85[ASN][1000 genomes]
rs28404806	0.87[ASN][1000 genomes]
rs28541422	0.85[ASN][1000 genomes]
rs28651447	0.85[ASN][1000 genomes]
rs28657001	0.85[ASN][1000 genomes]
rs28688252	0.85[ASN][1000 genomes]
rs28695212	0.85[ASN][1000 genomes]
rs28695716	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28744558	0.85[ASN][1000 genomes]
rs28833005	0.85[ASN][1000 genomes]
rs28837134	0.85[ASN][1000 genomes]
rs34469290	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34571038	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34605750	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34611707	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34941412	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35019194	0.85[ASN][1000 genomes]
rs35135316	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35136767	0.83[ASN][1000 genomes]
rs35147271	0.85[ASN][1000 genomes]
rs35745834	0.83[ASN][1000 genomes]
rs35842909	0.85[ASN][1000 genomes]
rs36057011	0.85[ASN][1000 genomes]
rs4503758	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55744943	0.83[ASN][1000 genomes]
rs57905971	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67908345	0.80[ASN][1000 genomes]
rs71403504	0.80[ASN][1000 genomes]
rs7165531	0.82[ASN][1000 genomes]
rs74026532	0.83[ASN][1000 genomes]
rs8026234	0.85[ASN][1000 genomes]
rs8027311	0.91[ASN][1000 genomes]
rs8028002	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
6	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
8	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76005200-76013400	Weak transcription	Esophagus	oesophagus
2	chr15:76005600-76010000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:76005600-76010000	Weak transcription	Osteobl	bone
4	chr15:76005600-76016000	Weak transcription	Aorta	Aorta
5	chr15:76005800-76010800	Weak transcription	A549	lung
6	chr15:76006000-76009000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:76006000-76009400	Weak transcription	Left Ventricle	heart
8	chr15:76006000-76009800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:76006000-76009800	Weak transcription	Right Atrium	heart
10	chr15:76006000-76010600	Weak transcription	HMEC	breast
11	chr15:76006000-76013400	Weak transcription	Psoas Muscle	Psoas
12	chr15:76006200-76009800	Weak transcription	Right Ventricle	heart
13	chr15:76006200-76010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:76006400-76009000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:76006400-76009000	Weak transcription	Liver	Liver
16	chr15:76006400-76009400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:76006400-76009400	Weak transcription	NHLF	lung
18	chr15:76006400-76009800	Weak transcription	Lung	lung
19	chr15:76006400-76010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:76006400-76010800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:76006400-76010800	Weak transcription	NH-A	brain
22	chr15:76006400-76011000	Weak transcription	Ovary	ovary
23	chr15:76006400-76013200	Weak transcription	Fetal Intestine Large	intestine
24	chr15:76006400-76013400	Weak transcription	Fetal Heart	heart
25	chr15:76006400-76013600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:76006600-76008200	Enhancers	Stomach Smooth Muscle	stomach
27	chr15:76006600-76009000	Weak transcription	Fetal Lung	lung
28	chr15:76006600-76009800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:76006600-76011000	Enhancers	Fetal Muscle Leg	muscle
30	chr15:76006600-76013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:76006800-76008200	Enhancers	Stomach Mucosa	stomach
32	chr15:76006800-76009200	Weak transcription	Adipose Nuclei	Adipose
33	chr15:76007000-76010200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:76007400-76008000	Enhancers	Hela-S3	cervix
35	chr15:76007400-76008400	Enhancers	HSMM	muscle
36	chr15:76007400-76011000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:76007600-76008400	Enhancers	HSMMtube	muscle
38	chr15:76007600-76008600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr15:76007600-76011200	Enhancers	Fetal Stomach	stomach
40	chr15:76007800-76008000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:76007800-76008000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:76007800-76008200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:76007800-76008200	Enhancers	Colonic Mucosa	Colon
44	chr15:76007800-76008200	Enhancers	Duodenum Mucosa	Duodenum
45	chr15:76007800-76008200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr15:76007800-76008200	Enhancers	Gastric	stomach
47	chr15:76007800-76008200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:76007800-76008200	Enhancers	Rectal Smooth Muscle	rectum
49	chr15:76007800-76008200	Enhancers	Spleen	Spleen
50	chr15:76007800-76008400	Enhancers	Sigmoid Colon	Sigmoid Colon

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