Variant report

Variant	rs34403284
Chromosome Location	chr12:41378999-41379000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12809592	1.00[AFR][1000 genomes]
rs12811306	0.85[EUR][1000 genomes]
rs12812222	0.88[EUR][1000 genomes]
rs12812376	0.88[EUR][1000 genomes]
rs12816087	0.88[EUR][1000 genomes]
rs12828342	0.80[EUR][1000 genomes]
rs12828389	1.00[AFR][1000 genomes]
rs12828796	0.80[EUR][1000 genomes]
rs34128411	0.88[EUR][1000 genomes]
rs34482675	0.88[EUR][1000 genomes]
rs34554849	1.00[AFR][1000 genomes]
rs34601389	0.80[EUR][1000 genomes]
rs34622861	0.80[EUR][1000 genomes]
rs34739748	0.80[EUR][1000 genomes]
rs35068475	0.88[EUR][1000 genomes]
rs35143604	0.80[EUR][1000 genomes]
rs35188176	0.80[EUR][1000 genomes]
rs35243767	0.80[EUR][1000 genomes]
rs35328876	0.88[EUR][1000 genomes]
rs35450098	0.80[EUR][1000 genomes]
rs35462205	0.88[EUR][1000 genomes]
rs35617364	0.80[EUR][1000 genomes]
rs35716153	0.80[EUR][1000 genomes]
rs35742712	1.00[AFR][1000 genomes]
rs35958887	0.80[EUR][1000 genomes]
rs55639255	1.00[AFR][1000 genomes]
rs71449788	0.80[EUR][1000 genomes]
rs71449789	0.80[EUR][1000 genomes]
rs71449790	0.88[EUR][1000 genomes]
rs71449791	0.88[EUR][1000 genomes]
rs71449793	0.88[EUR][1000 genomes]
rs71449794	0.88[EUR][1000 genomes]
rs71449796	0.88[EUR][1000 genomes]
rs71449797	0.88[EUR][1000 genomes]
rs71449802	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1042296	chr12:41372512-41401840	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3441581	chr12:41376785-41379183	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41374600-41404800	Weak transcription	Brain Angular Gyrus	brain
2	chr12:41374800-41386200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:41377400-41386200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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