Variant report

Variant	rs34409381
Chromosome Location	chr2:145827817-145827818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10496972	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12616953	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12618061	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12691705	0.80[ASN][1000 genomes]
rs12990539	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12990953	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13001583	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13004410	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13009916	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13010262	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13033869	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16824386	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1830321	0.80[ASN][1000 genomes]
rs1852684	0.80[ASN][1000 genomes]
rs1898732	0.83[EUR][1000 genomes]
rs2381685	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34985138	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4662413	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56014517	0.86[EUR][1000 genomes]
rs6725803	0.80[ASN][1000 genomes]
rs67431032	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7561039	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145824200-145830600	Weak transcription	Aorta	Aorta
2	chr2:145826200-145829200	Enhancers	HMEC	breast
3	chr2:145826600-145829000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:145827000-145828000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:145827400-145828000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:145827800-145828600	Enhancers	NHEK	skin
7	chr2:145827800-145833200	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links