Variant report

Variant	rs67431032
Chromosome Location	chr2:145800414-145800415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10496972	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12616953	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12618061	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12990539	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12990953	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13001583	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13004410	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13009916	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13010262	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13033869	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16824386	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1898732	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2381685	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34409381	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34985138	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4662413	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7561039	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145789200-145802400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:145796000-145808600	Weak transcription	Ovary	ovary
3	chr2:145796200-145800600	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:145796200-145801000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:145796200-145801000	Weak transcription	Left Ventricle	heart
6	chr2:145796200-145802400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:145799000-145801600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:145799400-145802400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:145799600-145800800	Weak transcription	Esophagus	oesophagus
10	chr2:145799600-145801600	Enhancers	Brain Substantia Nigra	brain
11	chr2:145799800-145800800	Weak transcription	A549	lung
12	chr2:145800200-145801000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:145800200-145801800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links