Variant report

Variant	rs34414843
Chromosome Location	chr3:118621523-118621524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10212391	1.00[EUR][1000 genomes]
rs11917872	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11919070	1.00[EUR][1000 genomes]
rs11921594	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923296	1.00[EUR][1000 genomes]
rs11924178	1.00[EUR][1000 genomes]
rs11925505	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11928039	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11929112	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60177242	1.00[EUR][1000 genomes]
rs6762269	1.00[EUR][1000 genomes]
rs6766405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6809801	1.00[EUR][1000 genomes]
rs72953018	1.00[EUR][1000 genomes]
rs72966806	1.00[EUR][1000 genomes]
rs9813328	1.00[EUR][1000 genomes]
rs9834188	1.00[EUR][1000 genomes]
rs9847272	1.00[EUR][1000 genomes]
rs9854240	1.00[EUR][1000 genomes]
rs9860233	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv822226	chr3:118621434-118622945	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118612200-118625600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:118614200-118625000	Weak transcription	Aorta	Aorta
3	chr3:118618200-118623400	Strong transcription	Brain Hippocampus Middle	brain
4	chr3:118619200-118623000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:118619800-118624600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:118619800-118625000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:118620200-118622000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:118620200-118625400	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:118620200-118627200	Weak transcription	Fetal Brain Female	brain
11	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
12	chr3:118620400-118622800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:118620400-118625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:118621000-118621800	Strong transcription	Brain Germinal Matrix	brain
15	chr3:118621000-118622200	Strong transcription	Ovary	ovary
16	chr3:118621000-118623400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:118621400-118621600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:118621400-118621800	Strong transcription	Brain Cingulate Gyrus	brain
19	chr3:118621400-118621800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:118621400-118622000	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:118621400-118623000	Strong transcription	Brain Angular Gyrus	brain
22	chr3:118621400-118623400	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr3:118621400-118623400	Strong transcription	Brain Substantia Nigra	brain
24	chr3:118621400-118624000	Strong transcription	Brain Anterior Caudate	brain
25	chr3:118621400-118626800	Weak transcription	A549	lung

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