Variant report
| Variant | rs9860233 |
|---|---|
| Chromosome Location | chr3:118589454-118589455 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:118588536..118591419-chr3:118859926..118861811,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10212391 | 1.00[EUR][1000 genomes] |
| rs11917872 | 1.00[EUR][1000 genomes] |
| rs11919070 | 1.00[EUR][1000 genomes] |
| rs11921594 | 1.00[EUR][1000 genomes] |
| rs11923296 | 1.00[EUR][1000 genomes] |
| rs11924088 | 0.91[AMR][1000 genomes] |
| rs11924178 | 1.00[EUR][1000 genomes] |
| rs11925505 | 1.00[EUR][1000 genomes] |
| rs11928039 | 1.00[EUR][1000 genomes] |
| rs11929112 | 1.00[EUR][1000 genomes] |
| rs34414843 | 1.00[EUR][1000 genomes] |
| rs55640220 | 0.91[AMR][1000 genomes] |
| rs60177242 | 1.00[EUR][1000 genomes] |
| rs60856936 | 0.91[AMR][1000 genomes] |
| rs6762269 | 1.00[EUR][1000 genomes] |
| rs6766405 | 1.00[EUR][1000 genomes] |
| rs6801051 | 0.91[AMR][1000 genomes] |
| rs6809801 | 1.00[EUR][1000 genomes] |
| rs72953018 | 1.00[EUR][1000 genomes] |
| rs72958920 | 1.00[EUR][1000 genomes] |
| rs72966806 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9813328 | 1.00[EUR][1000 genomes] |
| rs9834188 | 1.00[EUR][1000 genomes] |
| rs9847272 | 1.00[EUR][1000 genomes] |
| rs9854240 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3487859 | chr3:118570588-119419623 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | esv3487860 | chr3:118570588-119419623 | Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118581200-118590000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
