Variant report

Variant	rs34416516
Chromosome Location	chr2:213233169-213233170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10165393	0.85[ASN][1000 genomes]
rs10186360	0.85[ASN][1000 genomes]
rs10186462	0.85[ASN][1000 genomes]
rs10186519	0.85[ASN][1000 genomes]
rs10186681	0.85[ASN][1000 genomes]
rs10189506	0.85[ASN][1000 genomes]
rs10201724	0.85[ASN][1000 genomes]
rs12694278	0.95[ASN][1000 genomes]
rs12994616	0.85[ASN][1000 genomes]
rs13004266	0.89[ASN][1000 genomes]
rs13016456	0.85[ASN][1000 genomes]
rs13030181	0.85[ASN][1000 genomes]
rs13031888	0.95[ASN][1000 genomes]
rs13034566	0.85[ASN][1000 genomes]
rs13034755	0.85[ASN][1000 genomes]
rs1394800	0.95[ASN][1000 genomes]
rs1505352	0.85[ASN][1000 genomes]
rs1505375	0.85[ASN][1000 genomes]
rs28510380	0.85[ASN][1000 genomes]
rs34777887	0.85[ASN][1000 genomes]
rs35508685	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35880620	0.85[ASN][1000 genomes]
rs4465721	0.95[ASN][1000 genomes]
rs73987402	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834526	chr2:213114901-213237146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv3149	chr2:213204282-213248966	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv584422	chr2:213214303-213270427	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213219200-213233600	Weak transcription	Psoas Muscle	Psoas
2	chr2:213231000-213233400	Weak transcription	Fetal Heart	heart
3	chr2:213231600-213233400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:213232200-213233400	Weak transcription	Brain Substantia Nigra	brain

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