Variant report

Variant	rs73987402
Chromosome Location	chr2:213285894-213285895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10165393	0.85[ASN][1000 genomes]
rs10186360	0.85[ASN][1000 genomes]
rs10186462	0.85[ASN][1000 genomes]
rs10186519	0.85[ASN][1000 genomes]
rs10186681	0.85[ASN][1000 genomes]
rs10189506	0.85[ASN][1000 genomes]
rs10201724	0.85[ASN][1000 genomes]
rs12994616	0.85[ASN][1000 genomes]
rs13004266	0.90[ASN][1000 genomes]
rs13016456	0.85[ASN][1000 genomes]
rs13030181	0.85[ASN][1000 genomes]
rs13034566	0.85[ASN][1000 genomes]
rs13034755	0.85[ASN][1000 genomes]
rs1505352	0.85[ASN][1000 genomes]
rs1505375	0.85[ASN][1000 genomes]
rs16848535	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848540	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28510380	0.85[ASN][1000 genomes]
rs34416516	0.81[ASN][1000 genomes]
rs34777887	0.85[ASN][1000 genomes]
rs35508685	0.90[ASN][1000 genomes]
rs35880620	0.85[ASN][1000 genomes]
rs55778914	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73987400	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763101	chr2:213248318-213290535	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213281600-213286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:213282400-213287000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:213282800-213286200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:213284200-213287000	Enhancers	Brain Substantia Nigra	brain
5	chr2:213284800-213287000	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:213285200-213287200	Enhancers	Brain Hippocampus Middle	brain
7	chr2:213285400-213288200	Enhancers	NHDF-Ad	bronchial
8	chr2:213285800-213286200	Weak transcription	Brain Anterior Caudate	brain

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