Variant report

Variant	rs34416950
Chromosome Location	chr9:27181373-27181374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1319528	0.80[AMR][1000 genomes]
rs13286917	0.80[AMR][1000 genomes]
rs13295206	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13298110	0.88[AMR][1000 genomes]
rs2224530	0.85[ASN][1000 genomes]
rs2273722	0.83[AMR][1000 genomes]
rs2273723	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35275206	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35417610	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs590894	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv6512	chr9:27155677-27200455	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892864	chr9:27176554-27296705	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv466335	chr9:27179244-27234029	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv613946	chr9:27179244-27234029	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27152400-27181600	Weak transcription	Adipose Nuclei	Adipose
3	chr9:27158200-27183600	Weak transcription	Lung	lung
4	chr9:27165400-27198200	Weak transcription	Ovary	ovary
5	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:27165800-27181600	Weak transcription	Fetal Lung	lung
7	chr9:27166000-27183600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
9	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:27174800-27183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:27174800-27183800	Weak transcription	Right Ventricle	heart
13	chr9:27178400-27183600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:27179000-27182400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:27179400-27182400	Enhancers	HSMM	muscle
17	chr9:27179400-27184800	Enhancers	NHEK	skin
18	chr9:27179600-27184200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:27179600-27191800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:27179800-27182000	Weak transcription	HSMMtube	muscle
21	chr9:27180000-27181400	Weak transcription	Osteobl	bone
22	chr9:27180000-27183400	Weak transcription	NH-A	brain
23	chr9:27180200-27181400	Weak transcription	Hela-S3	cervix
24	chr9:27180400-27183600	Weak transcription	Left Ventricle	heart
25	chr9:27180600-27184600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr9:27180800-27181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:27180800-27182000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:27180800-27182600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:27180800-27184200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:27180800-27191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:27180800-27230600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:27181000-27184200	Enhancers	HMEC	breast
33	chr9:27181200-27181600	Enhancers	NHLF	lung
34	chr9:27181200-27181800	Enhancers	HUVEC	blood vessel

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