Variant report

Variant	rs344286
Chromosome Location	chr8:62867110-62867111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12675288	0.82[ASN][1000 genomes]
rs12679842	0.84[ASN][1000 genomes]
rs2882578	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344202	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344214	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344235	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344247	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344250	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344255	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs344256	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344268	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344269	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344275	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs344309	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344336	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4430087	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57522057	0.82[ASN][1000 genomes]
rs675161	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7014220	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7832083	0.84[ASN][1000 genomes]
rs7834519	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62867000-62867600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr8:62867000-62867600	Enhancers	Gastric	stomach

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