Variant report

Variant	rs34458627
Chromosome Location	chr15:75019745-75019746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr15:75017435-75019834	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75014713..75016571-chr15:75018498..75020290,2	MCF-7	breast:
2	chr15:75018522..75021766-chr15:75024358..75026673,3	MCF-7	breast:
3	chr15:75008995..75011604-chr15:75018955..75020856,2	K562	blood:

Variant related genes	Relation type
CYP1A1	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2229729	1.00[AMR][1000 genomes]
rs34331219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35434501	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35892217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45627134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75018600-75021000	Enhancers	Fetal Heart	heart
2	chr15:75019200-75019800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:75019200-75019800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:75019200-75019800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
5	chr15:75019200-75020400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:75019200-75020400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr15:75019200-75020400	Enhancers	Left Ventricle	heart
8	chr15:75019200-75020400	Enhancers	A549	lung
9	chr15:75019200-75020600	Enhancers	Right Ventricle	heart
10	chr15:75019400-75019800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75019400-75019800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
12	chr15:75019400-75020000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:75019400-75020000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr15:75019400-75020400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr15:75019400-75020400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:75019400-75020400	Enhancers	Lung	lung
17	chr15:75019400-75020600	Enhancers	Liver	Liver
18	chr15:75019400-75020600	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr15:75019400-75020600	Enhancers	Hela-S3	cervix
20	chr15:75019400-75020600	Enhancers	HepG2	liver
21	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
22	chr15:75019600-75019800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
23	chr15:75019600-75020000	Weak transcription	Psoas Muscle	Psoas
24	chr15:75019600-75020600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr15:75019600-75022200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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