Variant report

Variant	rs35892217
Chromosome Location	chr15:75017484-75017485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74988339..74990569-chr15:75013985..75017605,3	MCF-7	breast:
2	chr15:75008663..75010376-chr15:75014450..75017669,3	K562	blood:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34331219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34458627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35434501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36099343	0.96[AFR][1000 genomes]
rs3809585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45627134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726155	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75012400-75017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75013000-75018000	Weak transcription	Left Ventricle	heart
3	chr15:75014200-75018200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr15:75016000-75018000	Flanking Active TSS	HepG2	liver
5	chr15:75016200-75017600	Enhancers	Placenta	Placenta
6	chr15:75016200-75017600	Enhancers	A549	lung
7	chr15:75016400-75017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75016600-75018000	Enhancers	Liver	Liver
9	chr15:75016800-75017600	Enhancers	Right Ventricle	heart
10	chr15:75017000-75017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:75017000-75018000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:75017000-75018000	Flanking Active TSS	Lung	lung
13	chr15:75017200-75017800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:75017200-75018000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:75017400-75017600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr15:75017400-75017600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:75017400-75017800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:75017400-75017800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:75017400-75017800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:75017400-75017800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:75017400-75017800	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr15:75017400-75018000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr15:75017400-75018000	Flanking Active TSS	Hela-S3	cervix
24	chr15:75017400-75018200	Active TSS	Primary T helper cells fromperipheralblood	blood

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